Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_484

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_483: 8851 - KOG1339 Aspartyl protease, at 1150104 to 1151338 8851 mRNA_484: 8852 - Hypothetical Protein, at 1151977 to 1154074 8852 mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1154487 to 1156857 8853

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,150,978 - 8851 mRNA_483 0.71 0.3
1,151,018 + 8851 mRNA_483 0.74 2.4
1,151,120 - 8851 mRNA_483 0.82 -0.2
1,151,171 + 8851 mRNA_483 0.86 0.3
1,151,301 - -0.4
1,151,308 + -2.5
1,151,338 + 0.9
1,151,422 + 0.7
1,151,428 - -1.1
1,151,450 - -0.6
1,151,450 + 0.7
1,151,452 + 0.1
1,151,453 + 0.3
1,151,460 - -0.5
1,151,472 + -0.9
1,151,484 + -0.0
1,151,492 + 1.6
1,151,506 - -0.1
1,151,506 - -1.3
1,151,524 - -0.0
1,151,526 + -0.0
1,151,546 - 2.2
1,151,546 - -1.1
1,151,599 + -0.6
1,151,634 - -0.6
1,151,775 + -0.2
1,152,216 + 8852 mRNA_484 0.11 -0.8
1,152,220 + 8852 mRNA_484 0.12 -0.3
1,152,391 + 8852 mRNA_484 0.20 -1.2
1,153,411 + 8852 mRNA_484 0.68 -2.3
1,153,513 - 8852 mRNA_484 0.73 -0.5
1,153,516 + 8852 mRNA_484 0.73 -0.4
1,153,541 + 8852 mRNA_484 0.75 0.1
1,153,645 - 8852 mRNA_484 0.80 0.3
1,153,653 + 8852 mRNA_484 0.80 -0.3
1,153,653 - 8852 mRNA_484 0.80 -0.8
1,153,681 - 8852 mRNA_484 0.81 -0.4
1,153,684 + 8852 mRNA_484 0.81 2.4
1,153,687 - 8852 mRNA_484 0.82 -0.3
1,153,693 + 8852 mRNA_484 0.82 -0.8
1,153,709 - 8852 mRNA_484 0.83 -1.1
1,153,714 - 8852 mRNA_484 0.83 0.9
1,153,718 + 8852 mRNA_484 0.83 -0.7
1,153,724 + 8852 mRNA_484 0.83 0.5
1,153,731 - 8852 mRNA_484 0.84 1.9
1,153,732 + 8852 mRNA_484 0.84 1.3
1,153,735 - 8852 mRNA_484 0.84 -0.8
1,153,738 + 8852 mRNA_484 0.84 1.7
1,153,748 - 8852 mRNA_484 0.84 0.7
1,153,751 - 8852 mRNA_484 0.85 0.7
1,153,753 - 8852 mRNA_484 0.85 0.2
1,153,769 + 8852 mRNA_484 0.85 1.9
1,153,771 + 8852 mRNA_484 0.86 0.4
1,153,783 + 8852 mRNA_484 0.86 -0.4
1,153,795 - 8852 mRNA_484 0.87 1.1
1,153,798 - 8852 mRNA_484 0.87 0.7
1,153,804 + 8852 mRNA_484 0.87 -0.1
1,153,814 + 8852 mRNA_484 0.88 -0.5
1,153,814 + 8852 mRNA_484 0.88 -0.6
1,153,877 - -0.5
1,153,884 + 3.3
1,153,902 + 0.7
1,153,902 + -1.0
1,153,920 - -1.0
1,153,943 + -0.4
1,153,949 + 0.5
1,153,962 + -0.4
1,153,964 + 0.7
1,153,965 + -1.2
1,153,979 - -0.3
1,154,003 - -0.9
1,154,027 + -0.6
1,154,034 + 0.0
1,154,089 - -0.4
1,154,099 - -1.0
1,154,128 + 0.6
1,154,136 + 0.7
1,154,269 - -0.8
1,154,270 - -0.8
1,154,411 + -0.9
1,154,414 - -1.0
1,154,429 - -0.1
1,154,430 + 0.0
1,154,472 - -0.8
1,154,505 - 0.8
1,154,511 + 0.6
1,154,521 + -0.2
1,154,532 - 0.1
1,154,551 + 1.7
1,154,561 - -0.4
1,154,612 + -0.7
1,154,615 + 0.6
1,154,622 + -1.0
1,154,623 + 0.2
1,154,628 + 0.5
1,154,809 - 8853 mRNA_485 0.14 -0.6
1,154,863 - 8853 mRNA_485 0.16 -0.5
1,154,870 - 8853 mRNA_485 0.16 -0.7
1,154,909 + 8853 mRNA_485 0.18 0.5