Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_481

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1117742 to 1121401 8848 mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1121651 to 1124733 8849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,121,408 + -0.7
1,121,425 + -1.4
1,122,009 + 8849 mRNA_481 0.12 -0.7
1,122,858 + 8849 mRNA_481 0.39 -1.3
1,123,146 + 8849 mRNA_481 0.48 -0.4
1,123,526 + 8849 mRNA_481 0.61 1.6
1,123,753 - 8849 mRNA_481 0.68 0.2
1,124,773 - 0.3
1,124,773 + 2.3
1,124,773 - 0.8
1,124,784 + 0.9
1,124,794 + 0.6
1,124,794 + -1.1
1,124,795 - -0.1
1,124,802 + 1.7
1,124,828 + 1.0
1,124,899 - 1.6
1,124,901 + 1.4
1,124,913 - 0.3
1,124,918 + 0.5
1,124,936 + -0.9
1,124,961 - 0.6
1,124,961 + 1.2
1,124,962 - -0.5
1,124,991 + -1.0
1,125,025 - 0.3
1,125,028 + -0.4
1,125,028 + 1.4
1,125,032 + 0.6
1,125,035 + 0.3
1,125,047 + -0.8
1,125,048 - 0.2
1,125,050 + -0.3
1,125,087 - 0.3
1,125,089 + 0.0
1,125,089 + 1.0
1,125,222 - 1.3
1,125,235 + 0.6
1,125,239 + -0.9
1,125,293 - -0.1
1,125,296 + -0.4
1,125,304 - -1.7
1,125,318 - -0.2
1,125,323 - 1.2
1,125,330 + -0.4
1,125,333 - 0.2
1,125,339 + 0.4
1,125,350 + -0.3
1,125,352 + -1.8
1,125,353 + 0.8
1,125,360 - -0.2
1,125,361 + 0.9
1,125,365 - -0.1
1,125,372 + -0.2
1,125,428 + -0.1
1,125,435 + 1.3
1,125,459 - -0.0
1,125,459 + 0.2
1,125,488 + 0.3
1,125,610 - -0.4
1,125,687 - 0.8
1,125,700 + 0.7
1,125,722 - -1.2