Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_451

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1048153 to 1050379 8818 mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1050947 to 1052587 8819 mRNA_452: 8820 - SUPERFAMILY--SSF52047, at 1053191 to 1054789 8820

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,050,135 - 8818 mRNA_450 0.89 -1.0
1,050,320 - -0.5
1,050,468 - 1.0
1,050,777 - 0.0
1,050,801 - 0.3
1,050,804 + -0.3
1,050,813 + 0.1
1,050,817 + 0.4
1,050,819 - -0.1
1,050,828 + 1.1
1,050,835 - 0.8
1,050,944 + -2.1
1,050,952 - 1.1
1,050,983 + -0.7
1,051,126 - 8819 mRNA_451 0.11 0.6
1,051,158 - 8819 mRNA_451 0.13 -0.6
1,051,582 - 8819 mRNA_451 0.39 1.5
1,051,837 + 8819 mRNA_451 0.54 -0.6
1,051,837 + 8819 mRNA_451 0.54 -0.8
1,051,853 - 8819 mRNA_451 0.55 1.1
1,052,008 + 8819 mRNA_451 0.65 0.4
1,052,128 - 8819 mRNA_451 0.72 0.2
1,052,286 + 8819 mRNA_451 0.82 0.8
1,052,300 - 8819 mRNA_451 0.82 0.6
1,052,306 - 8819 mRNA_451 0.83 1.2
1,052,574 - -0.1
1,052,574 - 0.1
1,053,005 - 1.4
1,053,295 - -0.1
1,053,472 + 8820 mRNA_452 0.18 -0.1
1,053,513 - 8820 mRNA_452 0.20 -1.4
1,053,580 - 8820 mRNA_452 0.24 -0.2