Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_377

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872244 to 876604 8744 mRNA_377: 8745 - KOG1515 Arylacetamide deacetylase, at 876931 to 878832 8745 mRNA_378: 8746 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 879759 to 883039 8746

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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875,981 + 8744 mRNA_376 0.86 0.8
876,104 + 8744 mRNA_376 0.89 -0.9
876,104 - 8744 mRNA_376 0.89 0.9
876,393 - -0.7
876,401 - -2.4
876,651 - 1.2
876,686 + -0.1
876,824 - 1.5
876,878 - -2.0
876,911 + 0.0
876,985 + 0.5
877,003 - -0.0
877,097 - 1.6
877,181 - 8745 mRNA_377 0.13 0.2
877,403 + 8745 mRNA_377 0.25 -0.1
877,825 + 8745 mRNA_377 0.47 1.5
877,857 - 8745 mRNA_377 0.49 0.9
877,869 + 8745 mRNA_377 0.49 0.2
877,893 + 8745 mRNA_377 0.51 1.0
878,174 - 8745 mRNA_377 0.65 -0.6
878,331 + 8745 mRNA_377 0.74 0.1
878,765 - 0.8
878,887 + -0.3
878,931 + 1.6
878,938 + 0.4
878,945 - 0.7
878,947 + 1.4
878,997 - -0.1
879,021 + 0.9
879,024 + 0.4
879,037 - 0.8
879,062 + -1.1
879,111 - -1.1
879,125 - -0.2
879,128 - 0.4
879,207 - -1.4
879,274 + -0.6
879,278 - 1.4
879,278 - 1.0
879,282 + -0.7
879,285 + -0.3
879,291 - 1.0
879,318 - -0.4
879,342 - 0.4
879,354 + 0.8
879,365 + 1.1
879,441 + -2.2
879,468 - 0.0
879,547 + -0.7
879,718 - -0.4