Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_324

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_323: 8691 - Hypothetical Protein, at 766259 to 767210 8691 mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767858 to 770027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770334 to 776057 8693

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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766,950 - 8691 mRNA_323 0.73 0.5
767,067 - 8691 mRNA_323 0.85 -0.8
767,149 - 1.3
767,181 + 0.9
767,238 - 1.3
767,288 - -0.2
767,324 + 0.3
767,333 + -0.1
767,337 + -1.1
767,361 - -2.5
767,411 + 1.7
767,506 - -0.3
767,511 + -1.1
767,530 - -0.0
767,530 - -0.4
767,537 + 0.6
767,538 + -0.1
767,557 + 0.0
767,564 - 0.4
767,577 + 0.4
767,585 + -0.5
767,594 + -1.2
767,603 + -0.2
767,653 - -1.4
767,658 - -0.5
767,664 - -1.3
767,664 - -0.1
767,680 + 1.1
767,685 + 0.5
767,784 + 0.9
767,821 - 0.8
767,823 + -0.1
767,839 + -0.0
767,865 + 1.6
767,964 - -0.9
768,124 + 8692 mRNA_324 0.12 -0.6
768,128 + 8692 mRNA_324 0.12 -0.1
768,253 - 8692 mRNA_324 0.18 0.9
768,712 + 8692 mRNA_324 0.39 -0.1
769,122 - 8692 mRNA_324 0.58 -1.0
770,322 + -2.0
770,330 - 1.1
770,456 + 0.3
770,920 + 8693 mRNA_325 0.10 0.7