Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_227

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_226: 8594 - KOG2861 Uncharacterized conserved protein, at 559154 to 560792 8594 mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561039 to 562506 8595 mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563158 to 565625 8596

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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560,129 + 8594 mRNA_226 0.59 1.5
560,425 - 8594 mRNA_226 0.78 1.9
560,884 - 1.2
561,130 - -0.8
561,429 - 8595 mRNA_227 0.27 0.9
561,441 + 8595 mRNA_227 0.27 0.7
561,713 - 8595 mRNA_227 0.46 0.2
562,324 + 8595 mRNA_227 0.88 0.9
562,325 + 8595 mRNA_227 0.88 1.0
562,332 + 8595 mRNA_227 0.88 0.8
562,431 + 1.6
562,463 + 0.4
562,604 - 0.0
562,624 + 1.5
562,625 - 0.2
562,626 + 1.0
562,631 + 1.5
562,766 - 0.5
562,915 - 0.5
562,915 + 0.4
562,925 - -1.2
562,926 - -1.4
562,926 + -1.4
562,934 + 0.9
562,939 + 0.8
562,967 + -0.0
563,006 - 0.1
563,007 + -0.6
563,008 - 0.2
563,024 + -0.4
563,025 - 0.5
563,025 + -0.8
563,030 - -0.7
563,034 - -0.6
563,047 + -1.0
563,048 + -0.4
563,055 + -0.1
563,068 - 0.0
563,071 + 0.4
563,072 - 0.6
563,074 + 0.3
563,085 - 0.4
563,087 + 0.3
563,087 + 1.3
563,099 - -2.2
563,114 + -0.2
563,190 + 0.6
563,203 - 0.7
563,206 + 1.6
563,207 + -1.3
563,211 - -0.5
563,213 - 2.0
563,213 + 0.1
563,218 + 1.6
563,222 + -0.1
563,226 - -0.1
563,227 + -0.7
563,260 - -0.3
563,361 - 1.0
563,362 + -0.3