Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_220

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_219: 8587 - Hypothetical Protein, at 541631 to 542423 8587 mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542754 to 544832 8588 mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545315 to 547571 8589

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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542,096 - 8587 mRNA_219 0.59 -1.6
542,213 - 8587 mRNA_219 0.73 0.2
542,224 - 8587 mRNA_219 0.75 1.1
542,525 + 0.2
542,699 + -0.5
543,027 + 8588 mRNA_220 0.13 0.6
543,117 - 8588 mRNA_220 0.17 -1.1
543,126 + 8588 mRNA_220 0.18 0.5
543,127 + 8588 mRNA_220 0.18 -1.8
543,236 + 8588 mRNA_220 0.23 -0.8
543,421 - 8588 mRNA_220 0.32 1.1
544,034 + 8588 mRNA_220 0.62 1.2
544,585 - 8588 mRNA_220 0.88 -0.3
544,586 + 8588 mRNA_220 0.88 -0.1
544,624 - 8588 mRNA_220 0.90 0.2
544,746 - 0.6
545,045 - 0.2
545,046 - -0.8
545,060 - 0.1
545,071 - -0.3
545,079 + -1.0
545,081 + 0.4
545,082 - -0.1
545,106 + -0.1
545,134 - 0.0
545,182 - 0.6
545,225 - -1.1
545,225 + 1.2
545,231 - 0.3
545,240 + -0.5
545,257 + 0.1
545,380 - 0.0
545,381 + -0.2
545,668 + 8589 mRNA_221 0.16 -1.6