Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_216

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_215: 8583 - Hypothetical Protein, at 533781 to 534618 8583 mRNA_216: 8584 - BLAST protein of choline transporter-like family [Rhodo..., at 534909 to 538209 8584 mRNA_217: 8585 - K02292 crtO beta-carotene ketolase (CrtO type), at 538550 to 540960 8585

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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533,939 + 8583 mRNA_215 0.19 -0.8
534,101 + 8583 mRNA_215 0.38 1.0
534,512 - 8583 mRNA_215 0.87 -0.7
534,563 - 1.4
534,575 + -2.0
534,575 + -0.3
534,826 - -2.4
534,857 + -0.0
535,057 + 0.5
535,588 + 8584 mRNA_216 0.21 1.8
535,825 + 8584 mRNA_216 0.28 0.3
535,859 + 8584 mRNA_216 0.29 0.1
535,967 + 8584 mRNA_216 0.32 -0.4
535,969 + 8584 mRNA_216 0.32 -2.0
535,980 + 8584 mRNA_216 0.32 -0.4
535,991 - 8584 mRNA_216 0.33 0.2
536,009 - 8584 mRNA_216 0.33 0.6
536,018 + 8584 mRNA_216 0.34 -0.7
536,019 - 8584 mRNA_216 0.34 -1.0
536,033 + 8584 mRNA_216 0.34 1.4
536,060 + 8584 mRNA_216 0.35 0.2
536,079 - 8584 mRNA_216 0.35 0.8
536,087 + 8584 mRNA_216 0.36 0.5
536,091 + 8584 mRNA_216 0.36 -0.2
536,101 + 8584 mRNA_216 0.36 -0.4
536,107 + 8584 mRNA_216 0.36 -2.0
536,107 + 8584 mRNA_216 0.36 -0.5
536,120 + 8584 mRNA_216 0.37 -0.3
536,129 - 8584 mRNA_216 0.37 0.4
536,131 + 8584 mRNA_216 0.37 0.4
536,136 + 8584 mRNA_216 0.37 -0.1
536,143 + 8584 mRNA_216 0.37 -0.4
536,148 - 8584 mRNA_216 0.38 0.3
536,148 - 8584 mRNA_216 0.38 -0.6
536,151 + 8584 mRNA_216 0.38 -2.1
536,163 - 8584 mRNA_216 0.38 -0.9
536,171 - 8584 mRNA_216 0.38 -1.2
536,175 + 8584 mRNA_216 0.38 1.6
536,195 - 8584 mRNA_216 0.39 0.4
536,332 + 8584 mRNA_216 0.43 -1.1
536,333 + 8584 mRNA_216 0.43 -0.8
536,345 - 8584 mRNA_216 0.44 1.7
536,350 - 8584 mRNA_216 0.44 -1.0
536,367 - 8584 mRNA_216 0.44 -0.3
536,495 - 8584 mRNA_216 0.48 -1.2
536,501 - 8584 mRNA_216 0.48 -0.2
536,502 - 8584 mRNA_216 0.48 -0.3
536,728 - 8584 mRNA_216 0.55 1.2
536,792 - 8584 mRNA_216 0.57 -1.7
536,905 - 8584 mRNA_216 0.60 1.4
537,206 - 8584 mRNA_216 0.70 0.9
537,366 + 8584 mRNA_216 0.74 -0.5
537,839 - 8584 mRNA_216 0.89 -1.2
537,843 + 8584 mRNA_216 0.89 -1.0
537,845 - 8584 mRNA_216 0.89 0.7
537,886 + 1.5
538,098 - 1.1
538,514 + -0.6
538,819 + 8585 mRNA_217 0.11 0.0
539,117 - 8585 mRNA_217 0.24 -2.3