Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_209

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_208: 8576 - K19270 yfbT, yniC sugar-phosphatase, at 509139 to 510075 8576 mRNA_209: 8577 - K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2, at 510155 to 514679 8577 mRNA_210: 8578 - K08675 PRSS15, PIM1 Lon-like ATP-dependent protease, at 515116 to 519191 8578

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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509,405 - 8576 mRNA_208 0.28 0.1
509,546 - 8576 mRNA_208 0.43 -0.0
510,127 + 0.0
510,420 + 1.3
510,716 - 8577 mRNA_209 0.12 1.9
510,737 - 8577 mRNA_209 0.13 2.2
511,182 - 8577 mRNA_209 0.23 2.0
511,262 + 8577 mRNA_209 0.24 1.5
511,301 + 8577 mRNA_209 0.25 0.5
511,757 + 8577 mRNA_209 0.35 2.3
512,329 - 8577 mRNA_209 0.48 2.5
512,529 + 8577 mRNA_209 0.52 1.8
512,600 - 8577 mRNA_209 0.54 1.4
512,864 + 8577 mRNA_209 0.60 2.5
512,869 + 8577 mRNA_209 0.60 3.4
512,951 - 8577 mRNA_209 0.62 1.7
513,402 + 8577 mRNA_209 0.72 2.0
513,583 - 8577 mRNA_209 0.76 0.6
513,683 - 8577 mRNA_209 0.78 1.5
514,007 + 8577 mRNA_209 0.85 1.8
514,414 - 1.5
514,418 - 1.4
514,444 + 1.8
514,571 + 4.0
514,576 - 2.0
514,576 - 0.8
514,577 + 2.4
514,577 - -0.2
514,697 + 2.0
514,852 - 2.4
514,872 - -1.1
514,878 - -0.2
514,907 - 2.4
514,987 - 0.2
515,024 - 1.3
515,030 - 1.3
515,040 - 2.5
515,041 + 0.6
515,054 - -0.5
515,063 + 0.6
515,087 + 0.4