Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_175

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426426 to 428792 8542 mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429470 to 431854 8543 mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432530 to 433945 8544

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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428,550 + 8542 mRNA_174 0.90 0.2
429,227 + -0.1
429,967 - 8543 mRNA_175 0.21 -0.5
430,153 + 8543 mRNA_175 0.29 -0.5
430,560 - 8543 mRNA_175 0.46 -1.2
430,592 + 8543 mRNA_175 0.47 -0.5
430,975 + 8543 mRNA_175 0.63 -0.6
431,077 - 8543 mRNA_175 0.67 -0.9
431,168 + 8543 mRNA_175 0.71 -2.1
431,348 - 8543 mRNA_175 0.79 -0.1
431,449 - 8543 mRNA_175 0.83 2.4
431,611 + 8543 mRNA_175 0.90 -0.7
431,682 + 0.1
431,765 + -0.7
431,780 - -0.8
431,801 - -0.2
431,802 + -0.2
431,817 - -1.3
431,839 + -3.2
431,942 + -0.9
431,952 - -0.7
431,964 + 1.9
431,969 + 1.4
431,969 - 1.0
431,973 + -1.0
431,974 + 0.1
431,978 - 0.9
431,986 + 0.5
431,988 + 0.3
431,990 + 0.1
431,991 + 0.4
431,991 - -0.3
431,997 + -0.2
432,005 - -0.6
432,005 - 0.0
432,013 + -1.7
432,031 + 1.4
432,044 + 0.1
432,045 + -0.4
432,049 + 0.9
432,049 + -0.1
432,054 + -0.4
432,068 + -0.6
432,070 + -1.3
432,072 - -0.1
432,072 - -0.3
432,073 + 0.7
432,079 + 0.5
432,085 + 0.9
432,089 + 0.3
432,093 + -0.7
432,111 + -0.6
432,150 + -0.7
432,151 + 0.5
432,155 + 1.4
432,160 - -0.3
432,167 + -1.2
432,168 + 1.0
432,174 - 1.2
432,181 - 0.6
432,188 + 1.6
432,191 - -0.2
432,193 - 1.2
432,194 + -2.8
432,197 - 0.9
432,202 + -0.1
432,204 - -1.1
432,209 - 0.3
432,211 - 0.3
432,213 - 0.0
432,222 - 1.8
432,224 + 0.7
432,230 + 0.8
432,231 + 0.2
432,267 - 2.0
432,274 - -0.3
432,290 - -0.3
432,330 - -0.2
432,336 - 0.2
432,336 + 0.3
432,337 + -0.7
432,347 + -0.2
432,351 + 0.3
432,365 - -0.1
432,373 - -1.4
432,378 + 0.1
432,388 + 0.7
432,815 - 8544 mRNA_176 0.20 0.6
432,819 + 8544 mRNA_176 0.20 0.4
432,830 + 8544 mRNA_176 0.21 -0.6
432,839 - 8544 mRNA_176 0.22 1.1