Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_142

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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342,072 + 0.4
342,127 + -0.5
342,129 + -0.3
342,131 - -0.2
342,144 + 0.2
342,149 - -0.8
342,167 + 0.2
342,171 - 0.3
342,177 + 0.5
342,187 - 0.3
342,220 - 0.1
342,230 - 0.5
342,230 - 0.1
342,248 - -1.8
342,249 + -1.3
342,250 - -0.2
342,250 + 1.0
342,274 + 1.8
342,293 - 1.1
342,309 - -0.9
342,313 + 0.6
342,317 - -0.1
342,326 - -0.2
342,328 - 0.4
342,328 - 0.1
342,330 - 0.1
342,337 - 0.2
342,342 + 0.0
342,344 + -0.0
342,344 + -1.5
342,353 + -0.8
342,476 + -0.4
342,477 + -0.8
342,487 + 0.0
342,488 - 0.5
342,491 - 0.1
342,493 - -1.2
342,550 - -0.2
342,591 - 0.9
342,611 - 0.5
342,619 - -1.1
342,620 + 0.6
342,626 + -1.0
342,639 - -0.7
342,652 + -0.9
342,742 - -0.2
342,750 - -0.5
342,759 - -0.3
342,761 + -0.2
342,762 + -0.2
342,791 - -0.2
342,793 + -0.5
342,808 - -0.2
342,811 + -0.8
342,884 - 1.6
342,951 + 0.2
342,996 - -0.2
343,129 - 1.4
343,132 - 0.6
343,136 + -1.1
343,148 - -0.2
343,184 - 2.2
343,473 + 1.2
344,027 - 1.1
344,199 - -0.1
344,524 - 8510 mRNA_142 0.12 0.4
344,617 + 8510 mRNA_142 0.13 1.4
344,632 - 8510 mRNA_142 0.13 -0.2
344,680 + 8510 mRNA_142 0.13 0.4
344,966 + 8510 mRNA_142 0.15 0.1
345,239 - 8510 mRNA_142 0.18 0.5
345,394 + 8510 mRNA_142 0.19 -0.2
345,419 - 8510 mRNA_142 0.19 1.8
345,458 + 8510 mRNA_142 0.19 0.2
345,527 - 8510 mRNA_142 0.20 -0.4
345,687 + 8510 mRNA_142 0.21 1.5
345,741 - 8510 mRNA_142 0.22 -1.3
345,764 + 8510 mRNA_142 0.22 -0.3
345,784 + 8510 mRNA_142 0.22 0.6
346,252 - 8510 mRNA_142 0.26 0.8
346,292 + 8510 mRNA_142 0.26 0.4
346,445 - 8510 mRNA_142 0.27 1.2
346,527 - 8510 mRNA_142 0.28 2.3
346,605 + 8510 mRNA_142 0.28 0.8
346,649 + 8510 mRNA_142 0.29 0.3
346,705 - 8510 mRNA_142 0.29 0.1
346,746 + 8510 mRNA_142 0.29 1.5
347,055 - 8510 mRNA_142 0.32 -0.1
347,061 - 8510 mRNA_142 0.32 0.3
347,068 - 8510 mRNA_142 0.32 1.5
347,074 + 8510 mRNA_142 0.32 0.3
347,166 - 8510 mRNA_142 0.33 0.4
347,192 + 8510 mRNA_142 0.33 -1.0
347,193 + 8510 mRNA_142 0.33 -1.1
347,272 - 8510 mRNA_142 0.34 -0.2
347,592 - 8510 mRNA_142 0.36 -0.8
347,635 - 8510 mRNA_142 0.36 -0.3
347,645 + 8510 mRNA_142 0.37 -0.1
347,661 - 8510 mRNA_142 0.37 0.5
347,669 + 8510 mRNA_142 0.37 0.6
347,788 + 8510 mRNA_142 0.38 0.0
348,162 + 8510 mRNA_142 0.41 -0.9
348,195 - 8510 mRNA_142 0.41 -0.3
348,328 + 8510 mRNA_142 0.42 0.6
348,450 + 8510 mRNA_142 0.43 0.7
348,591 - 8510 mRNA_142 0.44 -0.5
348,591 - 8510 mRNA_142 0.44 1.8
348,724 - 8510 mRNA_142 0.45 0.7
348,744 + 8510 mRNA_142 0.45 1.7
348,820 + 8510 mRNA_142 0.46 0.8
348,888 - 8510 mRNA_142 0.46 -0.1
348,903 - 8510 mRNA_142 0.46 -1.0
348,954 - 8510 mRNA_142 0.47 0.3
349,039 - 8510 mRNA_142 0.48 1.1
349,057 + 8510 mRNA_142 0.48 1.1
349,099 + 8510 mRNA_142 0.48 -0.3
349,383 - 8510 mRNA_142 0.50 0.6
349,439 - 8510 mRNA_142 0.51 -0.8
349,458 + 8510 mRNA_142 0.51 1.7
349,528 + 8510 mRNA_142 0.51 2.1
349,848 - 8510 mRNA_142 0.54 0.0
349,878 - 8510 mRNA_142 0.54 -0.4
349,932 - 8510 mRNA_142 0.55 -2.4
349,936 - 8510 mRNA_142 0.55 1.8
350,006 - 8510 mRNA_142 0.55 0.6
350,023 + 8510 mRNA_142 0.55 -0.4
350,107 - 8510 mRNA_142 0.56 -1.6
350,148 - 8510 mRNA_142 0.56 1.1
350,205 - 8510 mRNA_142 0.57 0.2
350,239 - 8510 mRNA_142 0.57 -1.2
350,350 - 8510 mRNA_142 0.58 0.6
350,384 + 8510 mRNA_142 0.58 -0.3
350,414 - 8510 mRNA_142 0.58 0.5
350,501 - 8510 mRNA_142 0.59 0.2
350,618 + 8510 mRNA_142 0.60 0.3
350,654 - 8510 mRNA_142 0.60 0.6
350,656 + 8510 mRNA_142 0.60 0.8
350,731 + 8510 mRNA_142 0.61 -1.0
350,751 - 8510 mRNA_142 0.61 1.8
350,778 - 8510 mRNA_142 0.61 0.4
350,818 - 8510 mRNA_142 0.62 0.6
351,055 + 8510 mRNA_142 0.63 -0.0
351,081 - 8510 mRNA_142 0.64 0.4
351,224 - 8510 mRNA_142 0.65 0.5
351,247 + 8510 mRNA_142 0.65 0.6
351,295 + 8510 mRNA_142 0.65 -0.2
351,316 + 8510 mRNA_142 0.65 -3.0
351,346 - 8510 mRNA_142 0.66 -0.5
351,454 - 8510 mRNA_142 0.67 0.7
351,516 + 8510 mRNA_142 0.67 0.0
351,574 - 8510 mRNA_142 0.67 0.2
351,584 - 8510 mRNA_142 0.68 -1.5
351,604 + 8510 mRNA_142 0.68 -1.1
351,640 - 8510 mRNA_142 0.68 2.0
351,660 + 8510 mRNA_142 0.68 -0.3
351,725 + 8510 mRNA_142 0.69 1.7
351,755 - 8510 mRNA_142 0.69 -0.3
351,796 - 8510 mRNA_142 0.69 1.4
351,802 + 8510 mRNA_142 0.69 0.2
351,990 - 8510 mRNA_142 0.71 0.1
352,000 - 8510 mRNA_142 0.71 0.8
352,021 - 8510 mRNA_142 0.71 -1.2
352,098 - 8510 mRNA_142 0.72 -1.1
352,103 + 8510 mRNA_142 0.72 -0.5
352,106 + 8510 mRNA_142 0.72 1.1
352,120 + 8510 mRNA_142 0.72 0.7
352,153 - 8510 mRNA_142 0.72 0.8
352,299 - 8510 mRNA_142 0.73 0.7
352,306 + 8510 mRNA_142 0.73 0.4
352,315 + 8510 mRNA_142 0.73 0.1
352,557 - 8510 mRNA_142 0.75 1.4
352,593 - 8510 mRNA_142 0.76 -0.2
352,593 - 8510 mRNA_142 0.76 1.8
352,809 + 8510 mRNA_142 0.77 0.4
352,867 + 8510 mRNA_142 0.78 1.7
352,913 - 8510 mRNA_142 0.78 1.5
352,917 + 8510 mRNA_142 0.78 1.2
353,043 - 8510 mRNA_142 0.79 -0.1
353,115 - 8510 mRNA_142 0.80 0.8
353,198 + 8510 mRNA_142 0.80 0.2
353,310 - 8510 mRNA_142 0.81 1.6
353,375 + 8510 mRNA_142 0.82 1.1
353,607 + 8510 mRNA_142 0.84 -1.5
353,613 - 8510 mRNA_142 0.84 0.8
353,705 + 8510 mRNA_142 0.84 0.4
353,845 - 8510 mRNA_142 0.85 0.1
353,855 + 8510 mRNA_142 0.85 -0.3
353,893 - 8510 mRNA_142 0.86 -0.9
353,895 + 8510 mRNA_142 0.86 -0.1
353,899 + 8510 mRNA_142 0.86 1.9
353,949 - 8510 mRNA_142 0.86 -0.2
354,024 + 8510 mRNA_142 0.87 1.1
354,039 - 8510 mRNA_142 0.87 2.1
354,076 - 8510 mRNA_142 0.87 0.1
354,146 + 8510 mRNA_142 0.88 1.3
354,172 + 8510 mRNA_142 0.88 -0.6
354,186 - 8510 mRNA_142 0.88 -0.6
354,222 - 8510 mRNA_142 0.88 1.8
354,230 + 8510 mRNA_142 0.88 0.6
354,482 + 0.6
354,653 - -1.1
354,729 - 1.8
355,099 - 0.5
355,161 - -0.3
355,374 - 0.1
355,403 - -0.5
355,418 - 1.7
355,442 - -1.6
355,531 + 0.2
355,647 + 0.2
355,755 - -0.2
355,785 + -0.3
355,804 + 0.3
356,035 + 3.2
356,179 - 0.1
356,187 - 0.6
356,537 - 8511 mRNA_143 0.21 -0.1
356,609 - 8511 mRNA_143 0.25 0.4
356,663 + 8511 mRNA_143 0.28 0.7
356,682 + 8511 mRNA_143 0.29 0.1