Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_70

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437 mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166029 to 167085 8438 mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167576 to 168117 8439

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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165,182 - 8437 mRNA_69 0.66 1.1
165,201 + 8437 mRNA_69 0.67 -0.2
165,467 + 8437 mRNA_69 0.81 1.5
165,660 - 0.1
165,771 + -0.5
165,799 + -0.9
165,801 - 0.2
165,832 + -0.8
165,875 - 0.7
165,879 - -1.1
165,882 + 0.4
165,888 - -5.6
165,897 - -0.5
165,899 - -1.6
165,912 - -1.4
165,912 + -1.0
165,926 - -0.0
165,940 + -1.3
165,940 + -0.6
165,942 - -1.6
165,951 - -0.1
165,952 - 0.7
165,952 + 1.8
165,953 + -0.0
165,966 - 1.6
165,967 + 0.3
166,098 + 1.1
166,099 - 0.6
166,103 + -0.7
166,113 - 0.3
166,117 + -0.7
166,117 + 1.6
166,126 + -0.6
166,255 + 8438 mRNA_70 0.21 -0.7
166,263 - 8438 mRNA_70 0.22 1.0
166,400 + 8438 mRNA_70 0.35 1.2
166,406 - 8438 mRNA_70 0.36 -0.0
167,233 - -0.0
167,246 + -0.4
167,302 + 1.2
167,411 + 1.4
167,413 + 0.1