Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_51

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_50: 8418 - KOG1611 Predicted short chain-type dehydrogenase, at 118975 to 119840 8418 mRNA_51: 8419 - K10392 KIF1 kinesin family member 1, at 120072 to 126065 8419 mRNA_52: 8420 - Hypothetical Protein, at 126119 to 126700 8420 mRNA_53: 8421 - K03014 RPB6, POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2, at 126911 to 127593 8421

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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119,302 + 8418 mRNA_50 0.38 -0.3
119,387 - 8418 mRNA_50 0.48 -1.4
119,413 + 8418 mRNA_50 0.51 -0.2
119,416 - 8418 mRNA_50 0.51 0.5
119,416 - 8418 mRNA_50 0.51 -0.1
119,417 - 8418 mRNA_50 0.51 0.1
119,422 + 8418 mRNA_50 0.52 -0.9
119,422 + 8418 mRNA_50 0.52 -0.6
119,600 + 8418 mRNA_50 0.72 1.7
119,707 - 8418 mRNA_50 0.85 -1.3
119,957 + 0.0
120,035 + 0.5
120,142 - -0.5
120,383 + -1.8
120,401 - -1.6
120,434 - -1.5
120,549 + -1.9
120,695 - 8419 mRNA_51 0.10 -1.5
120,744 + 8419 mRNA_51 0.11 -1.4
121,182 - 8419 mRNA_51 0.19 0.8
121,438 - 8419 mRNA_51 0.23 -1.1
121,447 - 8419 mRNA_51 0.23 -0.5
121,579 - 8419 mRNA_51 0.25 -0.9
121,616 + 8419 mRNA_51 0.26 -0.1
121,711 + 8419 mRNA_51 0.27 -0.2
122,154 - 8419 mRNA_51 0.35 -2.0
122,332 - 8419 mRNA_51 0.38 -0.6
122,347 + 8419 mRNA_51 0.38 1.0
122,637 + 8419 mRNA_51 0.43 -0.4
122,946 + 8419 mRNA_51 0.48 -1.6
122,958 - 8419 mRNA_51 0.48 -2.5
123,078 - 8419 mRNA_51 0.50 -2.6
123,092 + 8419 mRNA_51 0.50 -1.8
123,216 + 8419 mRNA_51 0.52 -0.4
123,233 - 8419 mRNA_51 0.53 1.2
123,836 - 8419 mRNA_51 0.63 -2.5
124,151 - 8419 mRNA_51 0.68 -1.3
124,160 - 8419 mRNA_51 0.68 -0.9
124,411 - 8419 mRNA_51 0.72 -1.0
124,593 - 8419 mRNA_51 0.75 -1.0
124,664 + 8419 mRNA_51 0.77 -0.6
124,766 + 8419 mRNA_51 0.78 -1.0
124,808 - 8419 mRNA_51 0.79 -0.1
124,975 + 8419 mRNA_51 0.82 -1.0
125,015 - 8419 mRNA_51 0.82 -1.8
125,052 - 8419 mRNA_51 0.83 -2.4
125,118 + 8419 mRNA_51 0.84 -2.0
125,121 - 8419 mRNA_51 0.84 0.1
125,156 - 8419 mRNA_51 0.85 1.2
125,162 + 8419 mRNA_51 0.85 -0.6
125,328 + 8419 mRNA_51 0.88 -1.5
125,450 - 8419 mRNA_51 0.90 1.1
125,563 - -0.3
125,964 + -0.2
126,009 - -0.7
126,011 + -0.9
126,151 + -2.0
126,158 + 0.6
126,297 + 8420 mRNA_52 0.31 2.3
126,298 - 8420 mRNA_52 0.31 -0.6
126,314 + 8420 mRNA_52 0.34 -1.3
126,324 + 8420 mRNA_52 0.35 -2.1
126,324 + 8420 mRNA_52 0.35 -1.7
126,425 - 8420 mRNA_52 0.53 0.5
126,428 - 8420 mRNA_52 0.53 1.1
126,430 - 8420 mRNA_52 0.53 -0.6
126,437 - 8420 mRNA_52 0.55 -0.3
126,448 + 8420 mRNA_52 0.57 0.6
126,452 + 8420 mRNA_52 0.57 -0.4