Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_19

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50473 to 51921 8386 mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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51,432 - 8386 mRNA_18 0.66 -0.2
51,550 + 8386 mRNA_18 0.74 -1.5
51,561 - 8386 mRNA_18 0.75 -1.3
51,562 + 8386 mRNA_18 0.75 1.9
51,654 + 8386 mRNA_18 0.82 -0.4
51,655 - 8386 mRNA_18 0.82 0.7
51,845 - 0.3
51,845 + 1.3
51,846 + -0.8
51,962 - -0.0
52,120 + -0.6
52,128 - 0.5
52,132 - 0.6
52,157 + 0.1
52,815 + 8387 mRNA_19 0.22 1.8
52,819 - 8387 mRNA_19 0.22 0.6
52,852 - 8387 mRNA_19 0.23 0.3
52,876 - 8387 mRNA_19 0.24 -0.6
52,889 - 8387 mRNA_19 0.25 1.7
52,897 + 8387 mRNA_19 0.25 1.6
52,952 - 8387 mRNA_19 0.28 -0.4
52,970 + 8387 mRNA_19 0.28 -1.1
53,847 + 8387 mRNA_19 0.66 -0.6
53,892 - 8387 mRNA_19 0.68 -1.3
53,900 + 8387 mRNA_19 0.68 -1.5
53,910 + 8387 mRNA_19 0.68 -0.7
53,912 - 8387 mRNA_19 0.68 -0.5
54,110 + 8387 mRNA_19 0.77 0.8
54,165 - 8387 mRNA_19 0.79 0.7
54,210 + 8387 mRNA_19 0.81 0.2
54,466 + 0.5
54,566 + -1.4
54,569 - -0.5
54,595 - -0.4
54,602 - -1.3
54,605 + -1.1
54,629 + -0.6
54,751 - 0.3
54,754 - -1.2
54,754 - 0.3
54,758 - 0.1
54,760 + 1.1
54,761 + 0.1
54,765 - -0.4
54,767 + 0.5
54,768 - 0.4
54,776 - 0.9
54,777 + -0.5
54,777 + 0.1
54,782 + -0.9
54,787 + -0.1
54,913 - 1.1
54,917 - 1.6
54,947 + 1.7
54,947 + 0.6
54,952 - -2.2
55,100 + -0.9
55,379 - 0.0
55,383 + -1.5