Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8460

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8460: 16828 - KOG0527 HMG-box transcription factor, at 1287256 to 1290060 16828 mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1290366 to 1291802 16829

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,286,263 - -0.0
1,286,278 + 0.4
1,286,388 - 0.1
1,286,391 - -2.7
1,286,417 - -0.2
1,286,513 + -0.2
1,286,547 - 1.1
1,286,569 - 0.0
1,286,692 + 2.0
1,286,813 - 0.3
1,286,829 - -0.2
1,286,847 - -0.6
1,286,851 + -0.0
1,286,870 + 0.4
1,286,876 + -0.5
1,286,881 - 0.5
1,286,882 + -0.0
1,286,895 + 1.3
1,286,903 + 0.3
1,286,903 + -0.6
1,286,908 + 0.6
1,286,980 - -0.2
1,286,996 - -0.4
1,287,025 + -0.4
1,287,174 + 0.2
1,287,204 + -0.2
1,287,204 + 0.7
1,287,238 + -0.5
1,287,488 + -0.6
1,287,648 + 16828 mRNA_8460 0.14 0.1
1,287,734 - 16828 mRNA_8460 0.17 -0.5
1,287,769 + 16828 mRNA_8460 0.18 0.1
1,287,910 - 16828 mRNA_8460 0.23 -0.6
1,287,910 - 16828 mRNA_8460 0.23 4.0
1,288,206 - 16828 mRNA_8460 0.34 -0.1
1,288,209 - 16828 mRNA_8460 0.34 -0.1
1,288,403 + 16828 mRNA_8460 0.41 0.7
1,288,537 - 16828 mRNA_8460 0.46 -2.5
1,288,568 + 16828 mRNA_8460 0.47 0.1
1,288,639 + 16828 mRNA_8460 0.49 -1.5
1,288,725 + 16828 mRNA_8460 0.52 -0.5
1,288,802 - 16828 mRNA_8460 0.55 1.3
1,289,479 + 16828 mRNA_8460 0.79 0.1
1,289,589 + 16828 mRNA_8460 0.83 0.9
1,289,670 - 16828 mRNA_8460 0.86 0.2
1,290,149 - -0.1
1,290,164 - 1.4
1,290,357 - 0.2
1,290,376 + -0.3
1,290,440 - -0.2
1,290,512 + 16829 mRNA_8461 0.10 -0.1
1,290,615 + 16829 mRNA_8461 0.17 0.2
1,290,794 - 16829 mRNA_8461 0.30 0.5
1,290,814 - 16829 mRNA_8461 0.31 -0.3
1,291,022 - 16829 mRNA_8461 0.46 -0.4
1,291,025 + 16829 mRNA_8461 0.46 -0.3
1,291,049 + 16829 mRNA_8461 0.48 -0.3