Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8431

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8430: 16798 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1209562 to 1211995 16798 mRNA_8431: 16799 - K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13, at 1212231 to 1215205 16799 mRNA_8432: 16800 - Hypothetical Protein, at 1215314 to 1218685 16800

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,211,237 - 16798 mRNA_8430 0.69 0.4
1,211,263 - 16798 mRNA_8430 0.70 -0.3
1,211,271 + 16798 mRNA_8430 0.70 0.6
1,211,376 + 16798 mRNA_8430 0.75 0.7
1,211,419 + 16798 mRNA_8430 0.76 0.2
1,211,521 + 16798 mRNA_8430 0.80 0.9
1,211,546 + 16798 mRNA_8430 0.82 -0.6
1,211,619 - 16798 mRNA_8430 0.85 0.3
1,211,675 - 16798 mRNA_8430 0.87 0.2
1,211,932 - -0.5
1,211,951 - -0.2
1,212,070 + -1.0
1,212,106 + 0.2
1,212,130 - 1.2
1,212,146 + 0.8
1,212,188 - -1.9
1,212,264 - 1.8
1,212,264 - 0.1
1,212,558 - 16799 mRNA_8431 0.11 -1.1
1,212,687 - 16799 mRNA_8431 0.15 -1.0
1,212,691 + 16799 mRNA_8431 0.15 -1.0
1,213,029 - 16799 mRNA_8431 0.27 -0.0
1,213,120 + 16799 mRNA_8431 0.30 -0.8
1,213,203 + 16799 mRNA_8431 0.33 -1.3
1,213,240 - 16799 mRNA_8431 0.34 -0.3
1,213,331 + 16799 mRNA_8431 0.37 -1.7
1,213,334 - 16799 mRNA_8431 0.37 -1.2
1,213,356 - 16799 mRNA_8431 0.38 -1.5
1,213,396 + 16799 mRNA_8431 0.39 -1.4
1,213,417 - 16799 mRNA_8431 0.40 -0.9
1,213,688 + 16799 mRNA_8431 0.49 -2.1
1,213,689 - 16799 mRNA_8431 0.49 -0.9
1,213,868 - 16799 mRNA_8431 0.55 0.2
1,213,953 + 16799 mRNA_8431 0.58 -0.8
1,214,112 - 16799 mRNA_8431 0.63 -1.2
1,214,194 + 16799 mRNA_8431 0.66 -2.0
1,214,403 + 16799 mRNA_8431 0.73 -1.2
1,214,834 - 16799 mRNA_8431 0.87 0.5
1,214,989 - -0.7
1,215,013 - -0.8
1,215,033 - -0.9
1,215,146 + -1.8
1,215,154 - 0.7
1,215,165 + -0.3
1,215,172 + -1.8
1,215,295 - -0.4
1,215,302 - -1.1
1,215,303 - -1.0
1,215,305 + -1.0
1,215,344 + -1.6
1,215,433 + 0.2
1,215,478 + -1.0
1,215,495 + -0.1
1,215,495 + 1.2
1,215,623 - -0.0
1,215,790 - 16800 mRNA_8432 0.14 0.6
1,216,077 - 16800 mRNA_8432 0.23 0.6
1,216,085 - 16800 mRNA_8432 0.23 0.4
1,216,113 - 16800 mRNA_8432 0.24 -1.1
1,216,177 - 16800 mRNA_8432 0.26 0.1