Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8411

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8410: 16778 - K12761 SNF1 carbon catabolite-derepressing protein kinase, at 1155634 to 1159160 16778 mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1159306 to 1160640 16779 mRNA_8412: 16780 - KOG2504 Monocarboxylate transporter, at 1160718 to 1162780 16780

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,158,456 - 16778 mRNA_8410 0.80 0.8
1,158,750 + 16778 mRNA_8410 0.88 -4.0
1,158,782 - 16778 mRNA_8410 0.89 -3.4
1,159,087 + -0.4
1,159,268 + -2.2
1,159,292 + -1.0
1,159,361 + 1.0
1,159,506 + 16779 mRNA_8411 0.15 -0.4
1,159,628 - 16779 mRNA_8411 0.24 -0.2
1,159,660 - 16779 mRNA_8411 0.27 -1.1
1,159,661 - 16779 mRNA_8411 0.27 1.4
1,159,751 - 16779 mRNA_8411 0.33 0.2
1,159,824 - 16779 mRNA_8411 0.39 -1.6
1,159,982 + 16779 mRNA_8411 0.51 -0.6
1,160,032 + 16779 mRNA_8411 0.54 0.1
1,160,072 + 16779 mRNA_8411 0.57 1.7
1,160,134 - 16779 mRNA_8411 0.62 -0.2
1,160,190 - 16779 mRNA_8411 0.66 -0.0
1,160,194 - 16779 mRNA_8411 0.67 0.3
1,160,210 + 16779 mRNA_8411 0.68 1.4
1,160,332 - 16779 mRNA_8411 0.77 0.1
1,160,365 + 16779 mRNA_8411 0.79 0.0
1,160,377 + 16779 mRNA_8411 0.80 0.8
1,160,514 - 0.2
1,160,525 + -0.1
1,160,530 + 0.1
1,160,542 + -0.6
1,160,677 + -1.7
1,160,681 + 1.6
1,160,813 + -4.5
1,160,813 + -1.3
1,160,823 - -1.4
1,160,825 + -0.5
1,160,834 - -1.2
1,160,834 + 0.1
1,160,962 - 16780 mRNA_8412 0.12 -0.3
1,160,996 + 16780 mRNA_8412 0.13 -0.0
1,161,069 - 16780 mRNA_8412 0.17 2.0
1,161,239 - 16780 mRNA_8412 0.25 -0.2
1,161,264 - 16780 mRNA_8412 0.26 1.7
1,161,452 + 16780 mRNA_8412 0.36 1.1
1,161,535 - 16780 mRNA_8412 0.40 0.6
1,161,575 - 16780 mRNA_8412 0.42 -0.2