Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8337

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968158 to 970145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970678 to 971361 16706

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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967,215 + 16704 mRNA_8336 0.66 -0.1
967,236 + 16704 mRNA_8336 0.67 -0.7
967,279 + 16704 mRNA_8336 0.70 0.1
967,504 + 16704 mRNA_8336 0.85 -0.3
967,657 + 1.2
967,666 + 0.6
967,796 + 1.7
967,803 - 2.9
967,807 - -2.6
967,809 + -0.6
967,811 - 0.4
967,813 + -0.7
967,815 - -0.7
967,837 - 0.3
967,850 + -0.2
967,861 + 0.4
967,863 - -2.2
968,012 + 1.2
968,034 - -0.7
968,128 - -0.4
968,435 - 16705 mRNA_8337 0.14 -0.4
968,608 - 16705 mRNA_8337 0.23 -0.1
968,717 + 16705 mRNA_8337 0.28 -0.2
968,742 + 16705 mRNA_8337 0.29 -1.1
969,034 + 16705 mRNA_8337 0.44 -0.5
969,321 + 16705 mRNA_8337 0.59 0.2
969,341 + 16705 mRNA_8337 0.60 0.1
969,469 + 16705 mRNA_8337 0.66 -0.8
969,592 - 16705 mRNA_8337 0.72 -0.7
969,746 - 16705 mRNA_8337 0.80 -0.8
969,895 - 16705 mRNA_8337 0.87 -0.8
969,904 + 16705 mRNA_8337 0.88 1.7
970,019 + 0.8
970,078 + 1.1
970,083 + 1.0
970,371 + -0.3
970,375 - 1.8
970,376 + 0.3
970,377 + 1.0
970,409 + 1.0
970,431 + -0.6
970,471 + 0.6
970,487 - -0.4
970,495 + -0.3
970,503 - -0.6
970,620 - 0.2
970,793 + 16706 mRNA_8338 0.17 -4.4