Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8238

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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735,983 - 16605 mRNA_8237 0.86 2.3
736,010 - 16605 mRNA_8237 0.87 2.9
736,011 + 16605 mRNA_8237 0.88 1.6
736,019 + 16605 mRNA_8237 0.88 -0.3
736,025 + 16605 mRNA_8237 0.88 1.1
736,137 - 0.9
736,148 + 0.9
736,169 + 0.8
736,172 - 2.6
736,224 - 1.0
736,309 - 0.0
736,315 + -0.1
736,324 - -0.3
736,329 + 1.0
736,329 - 0.0
736,334 - 0.9
736,350 - 0.0
736,351 + -1.0
736,457 + -1.4
736,479 - -0.4
736,487 - 0.5
736,488 - 1.0
736,488 + -0.6
736,490 - 0.2
736,498 + 0.1
736,500 - -0.6
736,501 - 0.1
736,501 + 1.2
736,502 + 0.3
736,502 + -0.0
736,502 + 0.1
736,503 + -0.9
736,504 - -0.2
736,505 + -1.2
736,505 - 0.7
736,506 - 1.1
736,508 + -1.3
736,510 + 0.0
736,511 - 0.7
736,511 - -0.0
736,544 - -0.3
736,545 + 0.0
736,546 - -0.5
736,566 + -0.3
736,581 + 3.2
736,663 - -0.3
736,675 + -0.8
736,686 + -0.7
736,714 - -0.6
736,714 + 0.3
736,725 - -0.4
736,731 - -0.9
736,745 + -0.1
736,857 - 0.0
736,863 + 0.4
736,866 - -0.5
736,881 + 0.2
737,003 - 16606 mRNA_8238 0.12 -0.3
737,004 - 16606 mRNA_8238 0.12 0.2
737,005 + 16606 mRNA_8238 0.13 1.4
737,012 - 16606 mRNA_8238 0.13 -1.4
737,036 - 16606 mRNA_8238 0.15 -0.5
737,317 + 16606 mRNA_8238 0.42 -1.0
737,472 + 16606 mRNA_8238 0.57 0.8
737,573 - 16606 mRNA_8238 0.67 0.4
737,618 + 16606 mRNA_8238 0.71 -0.3
737,725 - 16606 mRNA_8238 0.81 0.3
737,832 - -1.6
737,838 + 0.5
737,849 - 1.2
737,854 + 0.1
737,857 - -2.2
737,868 + -1.1
737,900 + 0.1
737,902 - 1.4
737,957 + -0.5
737,975 - 2.1
737,976 - 0.1
737,979 + -0.1
737,987 + -0.1
737,989 - 0.6
737,994 - 0.6
738,011 + -0.1
738,016 + -0.3
738,027 - -0.7
738,045 + -0.0
738,048 - -1.2
738,050 - 1.6
738,054 + -1.5
738,072 - -0.2
738,135 + 0.8
738,174 - -0.4
738,179 + -1.4
738,204 - -0.2
738,207 + -1.2
738,215 + -0.2
738,337 + 1.1
738,473 + 16607 mRNA_8239 0.11 -0.2
738,488 + 16607 mRNA_8239 0.11 -0.7
738,618 - 16607 mRNA_8239 0.17 -1.8