Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8172

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8172: 16540 - K17592 SACS sacsin, at 590465 to 596519 16540 mRNA_8173: 16541 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 596757 to 597514 16541

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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589,652 + 1.1
589,692 + -0.3
589,835 + 0.6
589,987 - -0.6
590,106 - 1.8
590,112 - -0.4
590,123 + -0.2
590,256 + -1.0
590,258 - -0.1
590,268 + -0.1
590,270 + 0.2
590,294 - -0.0
590,427 + 0.3
590,452 - 0.1
590,594 - 0.0
590,790 - 1.0
591,057 + 0.3
591,306 - 16540 mRNA_8172 0.14 0.7
591,315 + 16540 mRNA_8172 0.14 2.6
591,486 + 16540 mRNA_8172 0.17 -0.4
591,592 - 16540 mRNA_8172 0.19 -0.1
591,754 - 16540 mRNA_8172 0.21 -0.1
592,493 + 16540 mRNA_8172 0.33 -0.4
592,836 + 16540 mRNA_8172 0.39 -0.4
592,917 - 16540 mRNA_8172 0.40 0.6
593,098 - 16540 mRNA_8172 0.43 0.2
593,885 - 16540 mRNA_8172 0.56 0.3
594,434 + 16540 mRNA_8172 0.66 0.8
594,441 + 16540 mRNA_8172 0.66 0.9
594,453 + 16540 mRNA_8172 0.66 0.2
595,137 + 16540 mRNA_8172 0.77 -0.3
595,285 - 16540 mRNA_8172 0.80 0.4
595,676 - 16540 mRNA_8172 0.86 1.2
595,787 - 16540 mRNA_8172 0.88 -0.2
595,921 - -0.2
596,404 - 0.9
596,532 + 0.5
596,941 + 16541 mRNA_8173 0.24 -0.3