Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8146

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518265 to 522947 16513 mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523156 to 525295 16514 mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525577 to 526736 16515

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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522,298 + 16513 mRNA_8145 0.86 0.7
522,423 + 16513 mRNA_8145 0.89 2.1
522,714 + 1.5
522,733 - -0.7
522,972 - 0.4
522,992 + 1.5
523,005 + -0.7
523,075 - -3.4
523,160 - 1.0
523,171 - -0.8
523,307 + -1.3
524,590 - 16514 mRNA_8146 0.67 0.1
524,595 + 16514 mRNA_8146 0.67 -1.4
524,890 + 16514 mRNA_8146 0.81 1.9
524,935 - 16514 mRNA_8146 0.83 -0.7
525,163 + -0.1
525,179 - -0.4
525,310 - -0.4
525,335 + -1.1
525,338 - -0.2
525,353 - 0.3
525,354 - -0.1
525,474 - -0.9
525,615 - -1.7
525,657 + -0.1
525,766 + 16515 mRNA_8147 0.16 -1.0
525,794 + 16515 mRNA_8147 0.19 1.8
526,113 + 16515 mRNA_8147 0.46 0.6
526,194 - 16515 mRNA_8147 0.53 1.0