Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8116

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8115: 16483 - K03868 RBX1, ROC1 RING-box protein 1, at 452309 to 453227 16483 mRNA_8116: 16484 - K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase, at 453564 to 454690 16484 mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455080 to 456482 16485

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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453,276 - 0.1
453,412 - 0.4
453,573 - -1.1
454,450 + 16484 mRNA_8116 0.79 -3.7
454,726 - -0.3
454,733 - 2.9
454,743 - 0.1
454,745 - -0.1
454,751 + -0.4
454,753 + -0.2
454,761 + -0.8
454,761 + 0.1
454,766 + 1.1
454,816 - 1.8
454,881 - -0.6
454,935 + 1.1
454,943 - -1.7
454,945 - -2.4
454,949 + -0.8
454,950 + 0.8
454,951 - -0.5
454,951 - 1.1
454,952 - -0.4
454,952 + 0.2
454,953 + -1.0
454,953 + -0.1
454,953 + -2.4
454,956 - 0.4
454,957 + -0.9
454,958 - -1.2
454,959 - -0.4
454,962 + -3.0
454,962 + -1.0
454,965 - 0.8
454,966 - 0.9
454,968 + 1.3
454,969 + 0.7
454,970 + -0.6
454,971 + -0.3
454,973 + -0.0
454,973 + 0.0
454,977 - 0.7
454,994 + 0.6
454,994 - -0.3
454,994 - 0.7
454,996 - 2.2
454,997 + -2.3
454,997 + -0.3
455,011 - 0.2
455,015 - -0.1
455,019 + -0.6
455,021 - 1.0
455,024 + -0.5
455,150 - 1.0
455,161 + 2.4
455,163 + 0.8
455,188 + -0.7
455,189 - 0.6
455,191 - 0.3
455,337 + 16485 mRNA_8117 0.18 -2.7
455,592 + 16485 mRNA_8117 0.36 -0.9