Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8060

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8059: 16427 - HMMPfam-Translation initiation factor IF-3, C-terminal domain-PF00707,HMMPfam-Translation initiation factor IF-3, N-terminal domain-PF05198,SUPERFAMILY--SSF54364,SUPERFAMILY--SSF55200, at 324105 to 324902 16427 mRNA_8060: 16428 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 325618 to 328246 16428 mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329115 to 329494 16429

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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325,074 - 0.1
325,242 + 0.8
325,408 + 0.9
325,415 + 0.4
325,417 - -0.8
325,420 - 0.1
325,422 - 2.9
325,452 + 1.2
325,481 + -0.1
325,487 - -1.2
325,488 - -0.8
325,492 - 0.8
325,494 - -1.0
325,505 + 1.0
325,506 + -0.0
325,508 - -0.5
325,511 - -0.1
325,520 + 0.7
325,532 + -0.5
325,558 - 1.7
325,561 + -0.3
325,565 + 0.0
325,567 + -0.5
325,568 + 0.7
325,575 - -0.2
325,584 - -0.5
325,724 - -0.8
325,730 - -0.2
325,734 + 0.4
325,737 + -0.0
325,737 - -0.7
325,738 + -0.2
325,739 + -1.1
325,744 + 0.8
325,747 - -0.4
325,865 - -0.1
325,880 - 1.0
325,886 - 16428 mRNA_8060 0.10 -0.3
325,898 + 16428 mRNA_8060 0.11 0.5
326,005 + 16428 mRNA_8060 0.15 1.4
326,033 + 16428 mRNA_8060 0.16 -0.2
326,034 - 16428 mRNA_8060 0.16 1.2
326,045 + 16428 mRNA_8060 0.16 0.7
326,185 - 16428 mRNA_8060 0.22 1.0
326,224 + 16428 mRNA_8060 0.23 0.7
326,902 + 16428 mRNA_8060 0.49 2.2
326,920 - 16428 mRNA_8060 0.50 0.6
327,243 + 16428 mRNA_8060 0.62 -0.1
327,362 + 16428 mRNA_8060 0.66 0.1
327,508 + 16428 mRNA_8060 0.72 0.3
327,529 - 16428 mRNA_8060 0.73 0.5
327,617 - 16428 mRNA_8060 0.76 1.0
327,618 + 16428 mRNA_8060 0.76 0.4
327,662 - 16428 mRNA_8060 0.78 0.4
327,708 + 16428 mRNA_8060 0.79 1.2
328,227 - -0.3
328,396 - 0.6
328,530 + 1.5
328,827 - 0.1
328,852 - 0.7