Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8012

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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208,904 - -0.1
208,955 + 0.4
208,958 - 0.3
208,965 - 0.1
208,969 - 0.6
209,011 - -0.5
209,162 + -0.4
209,168 + 1.4
209,438 + 0.1
209,588 + 16380 mRNA_8012 0.14 1.3
209,596 + 16380 mRNA_8012 0.14 0.7
209,856 + 16380 mRNA_8012 0.25 0.9
210,005 - 16380 mRNA_8012 0.31 -1.8
210,036 - 16380 mRNA_8012 0.33 -1.2
210,051 + 16380 mRNA_8012 0.33 0.9
210,312 + 16380 mRNA_8012 0.44 0.2
210,315 - 16380 mRNA_8012 0.45 0.9
210,563 - 16380 mRNA_8012 0.55 -0.4
210,914 - 16380 mRNA_8012 0.70 1.0
210,922 - 16380 mRNA_8012 0.71 0.7
210,922 - 16380 mRNA_8012 0.71 2.1
211,043 - 16380 mRNA_8012 0.76 2.1
211,199 + 16380 mRNA_8012 0.82 -0.5
211,228 + 16380 mRNA_8012 0.84 0.1
211,761 - 0.5
211,775 - 0.7
211,777 - 0.7
211,780 + -0.3
211,783 - -0.8
211,785 - 0.4
211,788 + -0.0
211,790 - -0.0
211,840 - -0.7
211,965 - 2.5
211,978 - 0.8
211,981 + 1.5
211,982 + 0.5
211,997 - -0.1
212,002 - 0.5
212,122 - 0.3
212,128 - 1.3
212,154 + -0.1
212,181 + 0.1
212,198 - 16381 mRNA_8013 0.10 -0.2
212,294 - 16381 mRNA_8013 0.18 1.3
212,444 + 16381 mRNA_8013 0.30 0.5
212,577 + 16381 mRNA_8013 0.40 0.3