Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7954

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85721 to 88276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88821 to 92965 16322 mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93400 to 95869 16323

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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87,867 - 16321 mRNA_7953 0.84 0.7
87,958 - 16321 mRNA_7953 0.88 -0.5
88,107 + -1.2
88,246 - -0.0
88,266 - 0.3
88,389 + -0.7
88,443 - 0.2
88,450 + 2.0
88,471 - 0.2
88,501 + 2.7
88,568 - -0.3
88,591 + 0.6
88,592 + 1.1
88,593 - 1.1
88,593 - -0.1
88,605 + -0.6
88,625 + 1.5
88,639 + -0.4
88,705 - 0.1
88,712 + -1.0
88,781 + 0.4
88,873 + -0.5
88,878 + 0.4
88,880 - -1.1
88,896 + 0.7
88,929 + 1.1
88,930 + 0.3
89,003 + 0.1
89,013 + 0.6
89,040 + 1.5
89,180 - -0.4
89,197 - 2.3
89,558 + 16322 mRNA_7954 0.18 0.9
89,664 + 16322 mRNA_7954 0.20 0.2
89,790 + 16322 mRNA_7954 0.23 0.3
89,921 + 16322 mRNA_7954 0.27 0.0
90,027 - 16322 mRNA_7954 0.29 0.8
90,250 - 16322 mRNA_7954 0.34 0.3
90,617 + 16322 mRNA_7954 0.43 -1.2
90,784 + 16322 mRNA_7954 0.47 -0.2
90,960 - 16322 mRNA_7954 0.52 -0.1
90,964 + 16322 mRNA_7954 0.52 1.4
91,083 + 16322 mRNA_7954 0.55 0.2
91,210 - 16322 mRNA_7954 0.58 -0.1
91,228 + 16322 mRNA_7954 0.58 -0.4
91,317 - 16322 mRNA_7954 0.60 0.4
91,651 + 16322 mRNA_7954 0.68 0.3
91,672 + 16322 mRNA_7954 0.69 -0.2
91,988 + 16322 mRNA_7954 0.76 1.0
92,096 - 16322 mRNA_7954 0.79 1.4
92,142 - 16322 mRNA_7954 0.80 1.0
92,215 - 16322 mRNA_7954 0.82 0.3
92,246 + 16322 mRNA_7954 0.83 -0.3
92,797 + -1.1
92,979 - 0.7
93,326 + -0.1
93,335 - 0.0
93,338 + -0.8
93,342 - 0.5
93,347 + 0.6
93,348 - -0.1
93,349 + 1.4
93,349 + 2.2
93,524 - -0.8
93,893 - 16323 mRNA_7955 0.20 1.6
93,956 - 16323 mRNA_7955 0.23 -0.1