Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7853

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7852: 16220 - Hypothetical Protein, at 1226411 to 1226632 16220 mRNA_7853: 16221 - Hypothetical Protein, at 1226936 to 1227400 16221 mRNA_7854: 16222 - HMMPfam-Fungal protein of unknown function (DUF2015)-PF09435, at 1227887 to 1228457 16222

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,226,238 - 0.0
1,226,261 - -2.2
1,226,265 + -0.8
1,226,268 + 0.1
1,226,292 + -1.6
1,226,331 - 1.0
1,226,560 - 16220 mRNA_7852 0.67 1.4
1,226,885 - -0.2
1,226,895 + 0.1
1,226,900 + 0.5
1,227,047 + 16221 mRNA_7853 0.24 1.7
1,227,102 - 16221 mRNA_7853 0.36 -0.4
1,227,102 - 16221 mRNA_7853 0.36 -0.4
1,227,118 - 16221 mRNA_7853 0.39 0.3
1,227,119 - 16221 mRNA_7853 0.39 0.6
1,227,151 - 16221 mRNA_7853 0.46 -0.8
1,227,158 - 16221 mRNA_7853 0.48 0.1
1,227,163 - 16221 mRNA_7853 0.49 0.0
1,227,175 - 16221 mRNA_7853 0.51 0.1
1,227,203 + 16221 mRNA_7853 0.57 -1.9
1,227,230 - 16221 mRNA_7853 0.63 -0.5
1,227,236 + 16221 mRNA_7853 0.65 0.7
1,227,241 + 16221 mRNA_7853 0.66 1.5
1,227,244 - 16221 mRNA_7853 0.66 -0.4
1,227,249 - 16221 mRNA_7853 0.67 -2.2
1,227,343 + 16221 mRNA_7853 0.88 -0.2
1,227,355 - 0.3
1,227,432 - 0.5
1,227,536 - -0.4
1,227,536 + 0.3
1,227,537 + -0.1
1,227,551 - 0.2
1,227,566 - 0.3
1,227,645 - -0.3
1,227,654 - 0.7
1,227,673 - -1.8
1,227,695 - -0.5
1,227,963 - 16222 mRNA_7854 0.13 -2.1
1,228,072 + 16222 mRNA_7854 0.32 -3.1
1,228,171 + 16222 mRNA_7854 0.50 1.2
1,228,354 + 16222 mRNA_7854 0.82 -0.8
1,228,375 + 16222 mRNA_7854 0.85 0.4