Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7778

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7777: 16145 - KOG0769 Predicted mitochondrial carrier protein, at 1039688 to 1041157 16145 mRNA_7778: 16146 - Hypothetical Protein, at 1041189 to 1043169 16146 mRNA_7779: 16147 - K06655 PHO85 negative regulator of the PHO system, at 1043917 to 1045287 16147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,040,679 - 16145 mRNA_7777 0.67 -2.1
1,041,200 - -3.3
1,041,237 - -1.7
1,041,237 + -0.7
1,041,246 + 0.4
1,041,249 + -0.3
1,041,307 - -0.2
1,041,400 + 16146 mRNA_7778 0.11 1.2
1,041,402 + 16146 mRNA_7778 0.11 -0.6
1,041,405 + 16146 mRNA_7778 0.11 0.4
1,041,409 - 16146 mRNA_7778 0.11 0.5
1,041,412 - 16146 mRNA_7778 0.11 -0.8
1,041,417 + 16146 mRNA_7778 0.12 -1.5
1,041,423 - 16146 mRNA_7778 0.12 0.4
1,041,426 + 16146 mRNA_7778 0.12 -0.6
1,041,437 + 16146 mRNA_7778 0.13 0.3
1,041,438 + 16146 mRNA_7778 0.13 -0.1
1,041,459 - 16146 mRNA_7778 0.14 -1.5
1,041,582 + 16146 mRNA_7778 0.20 0.7
1,042,639 + 16146 mRNA_7778 0.73 -1.5
1,042,900 - 16146 mRNA_7778 0.86 -0.4
1,043,092 - 1.4
1,043,103 + 1.4
1,043,264 - 1.6
1,043,362 - -0.5
1,043,376 - 0.8
1,043,386 + -2.2
1,043,387 - -0.1
1,043,396 + 0.4
1,043,401 - -0.3
1,043,405 + -0.3
1,043,406 + 0.2
1,043,434 + 1.0
1,043,582 + 1.3
1,043,600 + -1.0
1,043,602 - 0.7
1,043,616 + 0.2
1,043,750 + -1.2
1,043,878 - -0.7