Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7740

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962010 to 966625 16107 mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966858 to 968054 16108 mRNA_7741: 16109 - Hypothetical Protein, at 968367 to 969216 16109

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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965,935 - 16107 mRNA_7739 0.85 -0.6
966,019 + 16107 mRNA_7739 0.87 -1.1
966,040 - 16107 mRNA_7739 0.87 -2.6
966,048 + 16107 mRNA_7739 0.87 -2.5
966,106 - 16107 mRNA_7739 0.89 -2.0
966,150 - 16107 mRNA_7739 0.90 0.8
966,156 + 16107 mRNA_7739 0.90 0.2
966,204 - -2.4
966,204 - -2.6
966,220 + -1.0
966,242 - -0.4
966,246 + 0.1
966,350 + -0.1
966,400 - -3.0
966,510 + -2.4
966,759 + 0.3
966,763 + -0.3
966,768 + -1.4
966,935 - 0.9
966,949 - -0.1
966,997 + 16108 mRNA_7740 0.12 -0.4
966,997 + 16108 mRNA_7740 0.12 -1.2
966,997 + 16108 mRNA_7740 0.12 1.2
966,997 + 16108 mRNA_7740 0.12 -2.7
967,114 - 16108 mRNA_7740 0.21 -1.4
967,193 - 16108 mRNA_7740 0.28 -1.4
967,215 + 16108 mRNA_7740 0.30 -0.6
967,288 + 16108 mRNA_7740 0.36 -0.6
967,639 - 16108 mRNA_7740 0.65 -0.1
967,850 + 16108 mRNA_7740 0.83 0.9
967,850 + 16108 mRNA_7740 0.83 1.1
968,111 - -0.7
968,113 - 0.1
968,308 + -0.6
968,312 - 0.5
968,314 - -0.1
968,769 - 16109 mRNA_7741 0.47 0.6
968,904 + 16109 mRNA_7741 0.63 0.8
968,923 + 16109 mRNA_7741 0.65 -1.7