Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7526

Experiments: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495321 to 495867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495978 to 498115 15894 mRNA_7527: 15895 - K20031 ZDHHC6 palmitoyltransferase ZDHHC6, at 498360 to 499661 15895

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
495,157 - 0.8
495,613 - 15893 mRNA_7525 0.53 -0.4
495,637 + 15893 mRNA_7525 0.58 0.8
495,738 + 15893 mRNA_7525 0.76 -0.5
495,756 + 15893 mRNA_7525 0.80 0.3
495,765 + 15893 mRNA_7525 0.81 1.0
495,890 + 0.6
495,893 + 1.7
495,896 + -0.5
495,897 + -0.6
495,914 - 0.2
495,929 - 0.6
495,935 - 1.0
495,945 - -1.3
495,946 - 0.0
495,951 - -1.6
496,056 - 0.6
496,075 + -0.4
496,091 + -1.2
496,214 - 15894 mRNA_7526 0.11 -1.0
496,652 - 15894 mRNA_7526 0.32 1.9
496,943 + 15894 mRNA_7526 0.45 -1.4
496,945 - 15894 mRNA_7526 0.45 -0.3
497,044 - 15894 mRNA_7526 0.50 0.6
497,154 + 15894 mRNA_7526 0.55 -1.4
497,365 + 15894 mRNA_7526 0.65 0.5
497,366 - 15894 mRNA_7526 0.65 -0.3
497,619 + 15894 mRNA_7526 0.77 0.6
497,704 + 15894 mRNA_7526 0.81 0.0
497,967 + -2.5
497,973 - 3.3
498,094 - 1.1
498,246 - -0.1
498,249 - 0.6
498,276 + 2.4
498,577 - 15895 mRNA_7527 0.17 -0.4
498,591 - 15895 mRNA_7527 0.18 -1.0
498,595 + 15895 mRNA_7527 0.18 -1.7
498,726 - 15895 mRNA_7527 0.28 0.3
498,762 + 15895 mRNA_7527 0.31 1.5
498,901 - 15895 mRNA_7527 0.42 -1.5
499,014 - 15895 mRNA_7527 0.50 -0.4