Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7515

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7514: 15882 - K11757 PBRM1, PB1 protein polybromo-1, at 471027 to 473637 15882 mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473987 to 475256 15883 mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475785 to 476732 15884

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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473,232 - 15882 mRNA_7514 0.84 0.9
473,232 - 15882 mRNA_7514 0.84 0.7
473,283 - 15882 mRNA_7514 0.86 0.5
473,371 - 15882 mRNA_7514 0.90 0.2
473,380 + 0.4
473,380 + 1.3
473,402 + -0.2
473,403 + 0.4
473,405 + 0.0
473,663 - -3.4
473,669 + -0.5
473,673 - 0.1
473,679 - 2.5
473,758 + 0.0
473,856 - 0.3
473,907 - 0.7
474,014 + 1.5
474,017 + 2.3
474,151 - 15883 mRNA_7515 0.13 1.7
474,161 + 15883 mRNA_7515 0.14 0.8
474,172 - 15883 mRNA_7515 0.15 3.0
474,420 - 15883 mRNA_7515 0.34 2.8
474,497 + 15883 mRNA_7515 0.40 1.2
474,498 + 15883 mRNA_7515 0.40 2.5
474,590 + 15883 mRNA_7515 0.47 2.1
474,617 - 15883 mRNA_7515 0.50 1.9
474,632 - 15883 mRNA_7515 0.51 2.6
474,641 + 15883 mRNA_7515 0.51 2.4
474,656 - 15883 mRNA_7515 0.53 3.7
474,678 - 15883 mRNA_7515 0.54 1.2
474,680 - 15883 mRNA_7515 0.55 1.2
474,693 - 15883 mRNA_7515 0.56 2.6
474,701 - 15883 mRNA_7515 0.56 1.6
474,701 + 15883 mRNA_7515 0.56 2.2
474,705 + 15883 mRNA_7515 0.57 3.4
474,716 + 15883 mRNA_7515 0.57 1.9
474,719 - 15883 mRNA_7515 0.58 1.5
474,731 + 15883 mRNA_7515 0.59 2.4
474,788 + 15883 mRNA_7515 0.63 2.2
474,789 - 15883 mRNA_7515 0.63 2.0
474,796 + 15883 mRNA_7515 0.64 0.4
474,796 + 15883 mRNA_7515 0.64 3.7
474,798 + 15883 mRNA_7515 0.64 2.6
474,804 + 15883 mRNA_7515 0.64 4.1
474,818 - 15883 mRNA_7515 0.65 3.5
474,833 + 15883 mRNA_7515 0.67 2.8
474,833 - 15883 mRNA_7515 0.67 2.3
474,844 - 15883 mRNA_7515 0.67 2.9
474,849 + 15883 mRNA_7515 0.68 2.6
474,862 - 15883 mRNA_7515 0.69 3.1
474,872 - 15883 mRNA_7515 0.70 3.1
474,876 - 15883 mRNA_7515 0.70 3.0
474,897 - 15883 mRNA_7515 0.72 3.0
474,903 + 15883 mRNA_7515 0.72 2.9
474,905 + 15883 mRNA_7515 0.72 2.4
474,927 + 15883 mRNA_7515 0.74 2.6
474,928 + 15883 mRNA_7515 0.74 2.3
474,937 - 15883 mRNA_7515 0.75 2.6
474,949 - 15883 mRNA_7515 0.76 1.6
474,981 + 15883 mRNA_7515 0.78 2.7
475,001 - 15883 mRNA_7515 0.80 2.9
475,009 - 15883 mRNA_7515 0.80 3.3
475,027 + 15883 mRNA_7515 0.82 2.7
475,033 - 15883 mRNA_7515 0.82 1.6
475,043 + 15883 mRNA_7515 0.83 3.4
475,063 - 15883 mRNA_7515 0.85 2.1
475,064 + 15883 mRNA_7515 0.85 2.4
475,066 + 15883 mRNA_7515 0.85 1.5
475,225 - 2.5
475,314 + 1.8
475,317 - 2.2
475,330 - 2.0
475,336 + 2.9
475,338 + 2.4
475,340 + 1.1
475,365 - 3.3
475,490 - 1.2
475,494 - 0.3
475,513 + -1.2
475,549 + -0.2
475,647 - -0.8
475,651 - -0.9
475,664 - 0.4
475,672 - -0.1
475,682 - 0.6
475,686 + -0.2
475,820 - -0.3
475,959 - 15884 mRNA_7516 0.18 -0.7