Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7321

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1943 to 3763 15689 mRNA_7322: 15690 - K14849 RRP1 ribosomal RNA-processing protein 1, at 4422 to 5823 15690

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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945 + 15688 mRNA_7320 0.59 -0.4
1,059 + 15688 mRNA_7320 0.67 -0.7
1,167 + 15688 mRNA_7320 0.74 1.3
1,174 + 15688 mRNA_7320 0.75 2.2
1,182 - 15688 mRNA_7320 0.75 -0.5
1,196 + 15688 mRNA_7320 0.76 1.9
1,218 + 15688 mRNA_7320 0.78 -1.0
1,258 + 15688 mRNA_7320 0.81 0.1
1,326 - 15688 mRNA_7320 0.85 1.4
1,360 + 15688 mRNA_7320 0.88 -0.7
1,366 + 15688 mRNA_7320 0.88 0.2
1,497 - -0.2
1,518 + 0.1
1,582 + 0.3
1,666 - 1.8
1,675 + -0.7
1,789 - 0.1
1,907 + -0.4
1,929 + 0.7
1,948 + 0.2
2,105 - 0.2
2,297 - 15689 mRNA_7321 0.19 0.7
2,508 - 15689 mRNA_7321 0.31 1.3
2,521 + 15689 mRNA_7321 0.32 0.8
2,526 + 15689 mRNA_7321 0.32 0.1
2,529 - 15689 mRNA_7321 0.32 -1.4
2,529 - 15689 mRNA_7321 0.32 0.2
2,535 + 15689 mRNA_7321 0.33 0.4
2,537 + 15689 mRNA_7321 0.33 -0.3
2,546 + 15689 mRNA_7321 0.33 1.3
2,548 - 15689 mRNA_7321 0.33 0.4
2,680 + 15689 mRNA_7321 0.40 -1.3
2,682 - 15689 mRNA_7321 0.41 1.5
2,707 + 15689 mRNA_7321 0.42 0.2
2,723 - 15689 mRNA_7321 0.43 0.3
2,723 + 15689 mRNA_7321 0.43 1.4
2,787 - 15689 mRNA_7321 0.46 -1.9
2,811 - 15689 mRNA_7321 0.48 0.3
2,857 + 15689 mRNA_7321 0.50 0.9
2,870 + 15689 mRNA_7321 0.51 -0.1
2,884 + 15689 mRNA_7321 0.52 -0.3
2,924 + 15689 mRNA_7321 0.54 -0.7
2,973 + 15689 mRNA_7321 0.57 1.5
2,988 + 15689 mRNA_7321 0.57 -0.4
2,988 + 15689 mRNA_7321 0.57 -0.0
2,988 - 15689 mRNA_7321 0.57 -1.1
2,991 - 15689 mRNA_7321 0.58 1.2
3,008 + 15689 mRNA_7321 0.58 1.8
3,020 + 15689 mRNA_7321 0.59 -0.0
3,146 + 15689 mRNA_7321 0.66 -0.5
3,273 - 15689 mRNA_7321 0.73 -0.3
3,366 + 15689 mRNA_7321 0.78 1.9
3,391 + 15689 mRNA_7321 0.80 -0.8
3,397 + 15689 mRNA_7321 0.80 -0.2
3,407 - 15689 mRNA_7321 0.80 0.7
3,458 + 15689 mRNA_7321 0.83 -1.1
3,461 + 15689 mRNA_7321 0.83 1.0
3,499 + 15689 mRNA_7321 0.85 -1.1
3,517 + 15689 mRNA_7321 0.86 -0.4
3,520 + 15689 mRNA_7321 0.87 1.0
3,523 + 15689 mRNA_7321 0.87 1.2
3,564 + 15689 mRNA_7321 0.89 -0.2
3,645 - -0.2
3,732 + 0.5
3,815 + -1.8
3,862 - -0.4
3,864 - -0.7
3,919 - -0.1
3,939 + 0.2
3,945 - 0.1
3,951 + -1.5
3,964 + -0.3
3,971 + 0.9
3,971 + 1.3
3,971 - 0.2
3,979 - -0.6
3,985 - -0.3
3,986 + -0.8
4,018 - -1.2
4,041 - -2.2
4,042 + 0.5
4,046 - 0.3
4,055 - -0.1
4,058 + -1.0
4,059 + -1.3
4,061 - 0.5
4,072 + -0.5
4,080 - 1.0
4,092 - -1.3
4,117 + -2.0
4,138 - 0.2
4,151 + 1.8
4,156 + 0.9
4,178 + -1.5
4,316 + -1.3
4,320 + -0.0
4,339 + -2.3
4,343 - -2.1