Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7258

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7257: 15625 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 1233566 to 1236513 15625 mRNA_7258: 15626 - K11378 SAS3 histone acetyltransferase SAS3, at 1237198 to 1241619 15626 mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1241817 to 1243103 15627

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,236,317 - 3.5
1,236,379 - 0.6
1,236,567 + 0.3
1,236,586 + 0.8
1,236,878 - -0.2
1,237,168 - -0.6
1,237,246 - -0.1
1,237,325 + -1.2
1,237,414 - 1.5
1,237,545 + 0.7
1,237,733 - 15626 mRNA_7258 0.12 0.6
1,237,741 + 15626 mRNA_7258 0.12 0.7
1,237,770 - 15626 mRNA_7258 0.13 2.0
1,237,780 - 15626 mRNA_7258 0.13 0.5
1,237,943 - 15626 mRNA_7258 0.17 -0.4
1,238,015 + 15626 mRNA_7258 0.18 0.6
1,238,299 + 15626 mRNA_7258 0.25 -2.1
1,238,352 - 15626 mRNA_7258 0.26 -0.3
1,238,364 + 15626 mRNA_7258 0.26 1.0
1,238,575 - 15626 mRNA_7258 0.31 -1.0
1,238,620 + 15626 mRNA_7258 0.32 1.1
1,238,737 - 15626 mRNA_7258 0.35 0.8
1,239,055 + 15626 mRNA_7258 0.42 0.7
1,239,068 + 15626 mRNA_7258 0.42 -0.3
1,239,076 + 15626 mRNA_7258 0.42 -0.2
1,239,234 + 15626 mRNA_7258 0.46 0.7
1,239,238 + 15626 mRNA_7258 0.46 1.2
1,239,311 - 15626 mRNA_7258 0.48 -0.9
1,239,369 + 15626 mRNA_7258 0.49 -0.6
1,239,384 - 15626 mRNA_7258 0.49 -0.2
1,239,391 + 15626 mRNA_7258 0.50 -1.2
1,239,471 + 15626 mRNA_7258 0.51 -1.1
1,239,543 - 15626 mRNA_7258 0.53 -0.7
1,239,581 + 15626 mRNA_7258 0.54 -1.1
1,239,603 + 15626 mRNA_7258 0.54 -0.7
1,239,899 - 15626 mRNA_7258 0.61 -0.2
1,239,940 + 15626 mRNA_7258 0.62 0.9
1,239,965 + 15626 mRNA_7258 0.63 -1.5
1,240,051 - 15626 mRNA_7258 0.65 -1.5
1,240,065 - 15626 mRNA_7258 0.65 1.4
1,240,227 + 15626 mRNA_7258 0.68 0.3
1,240,297 + 15626 mRNA_7258 0.70 0.4
1,240,432 + 15626 mRNA_7258 0.73 0.4
1,240,559 + 15626 mRNA_7258 0.76 0.9
1,240,583 + 15626 mRNA_7258 0.77 0.6
1,240,796 - 15626 mRNA_7258 0.81 -0.8
1,240,865 + 15626 mRNA_7258 0.83 0.3
1,240,930 + 15626 mRNA_7258 0.84 -2.1
1,241,108 - 15626 mRNA_7258 0.88 2.5
1,241,273 + 1.2
1,241,498 - 1.3
1,241,530 - -0.2
1,241,698 + -0.8
1,241,702 + 1.0
1,241,822 + 1.5
1,241,825 - -0.8
1,241,870 - 1.2