Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7231

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7230: 15598 - K07019 K07019 uncharacterized protein, at 1181628 to 1183243 15598 mRNA_7231: 15599 - Hypothetical Protein, at 1183430 to 1185124 15599 mRNA_7232: 15600 - K10572 IPPK inositol-pentakisphosphate 2-kinase, at 1186072 to 1187585 15600

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,182,832 - 15598 mRNA_7230 0.75 0.9
1,182,839 + 15598 mRNA_7230 0.75 -1.1
1,182,851 - 15598 mRNA_7230 0.76 0.8
1,182,995 - 15598 mRNA_7230 0.85 -1.8
1,182,998 + 15598 mRNA_7230 0.85 1.6
1,183,013 + 15598 mRNA_7230 0.86 -2.2
1,183,131 - 0.1
1,183,148 - 1.3
1,183,155 + 0.6
1,183,161 + -0.8
1,183,281 - 0.2
1,183,292 + 1.0
1,183,294 + 0.0
1,183,299 + 0.2
1,183,300 - -0.4
1,183,308 - 0.4
1,183,308 - 1.3
1,183,310 - 0.6
1,183,313 + -0.0
1,183,317 + 1.3
1,183,325 + 1.4
1,183,348 + 2.9
1,183,479 + 2.9
1,183,503 + -0.4
1,183,582 - -1.8
1,183,598 - -2.0
1,183,912 + 15599 mRNA_7231 0.28 0.2
1,184,032 - 15599 mRNA_7231 0.36 0.8
1,184,178 + 15599 mRNA_7231 0.44 -0.3
1,184,206 + 15599 mRNA_7231 0.46 -0.6
1,184,342 + 15599 mRNA_7231 0.54 -1.0
1,184,539 + 15599 mRNA_7231 0.65 1.6
1,184,959 + 0.2
1,184,993 - 1.6
1,185,047 - -0.0
1,185,079 + -1.8
1,185,350 - -0.5
1,185,382 + -0.6
1,185,519 + 0.1
1,185,535 + 2.1
1,185,661 - -1.0
1,185,682 - 0.1
1,185,720 + 0.2
1,185,830 - -0.3
1,185,849 + 1.9
1,185,975 + 0.5
1,185,978 - -1.7