Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7159

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1014163 to 1016901 15526 mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1017040 to 1019381 15527 mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1019624 to 1022322 15528

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,016,089 + 15526 mRNA_7158 0.70 -0.2
1,016,119 - 15526 mRNA_7158 0.71 -0.2
1,016,378 - 15526 mRNA_7158 0.81 -1.1
1,016,802 + -1.1
1,016,814 - -1.1
1,016,973 + -0.3
1,016,998 - -0.6
1,016,999 - -0.7
1,017,000 + 0.5
1,017,005 + 0.4
1,017,007 - -0.9
1,017,091 + 1.4
1,017,250 + 0.3
1,017,416 - 15527 mRNA_7159 0.16 -0.6
1,017,661 + 15527 mRNA_7159 0.27 -1.0
1,018,242 - 15527 mRNA_7159 0.51 -0.7
1,018,407 - 15527 mRNA_7159 0.58 0.9
1,018,676 + 15527 mRNA_7159 0.70 -1.1
1,018,973 + 15527 mRNA_7159 0.83 0.6
1,018,975 - 15527 mRNA_7159 0.83 0.4
1,018,990 - 15527 mRNA_7159 0.83 -1.5
1,019,116 + 15527 mRNA_7159 0.89 -1.8
1,019,158 + 0.0
1,019,176 + 1.8
1,019,702 - 1.3
1,019,707 + -0.2
1,019,738 - -0.6
1,019,812 + -1.0
1,019,886 + -0.6
1,019,928 + 15528 mRNA_7160 0.11 -0.4
1,019,964 + 15528 mRNA_7160 0.13 -0.3
1,020,341 - 15528 mRNA_7160 0.27 -0.8