Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7137

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7136: 15504 - K01880 GARS, glyS1 glycyl-tRNA synthetase, at 961158 to 963860 15504 mRNA_7137: 15505 - KOG1933 Cholesterol transport protein (Niemann-Pick C disease protein), at 964045 to 968474 15505 mRNA_7138: 15506 - K14655 RIB2, PUS8 tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase, at 968699 to 969330 15506

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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964,087 + -0.3
964,417 + -2.2
964,546 + 15505 mRNA_7137 0.11 -4.0
964,926 + 15505 mRNA_7137 0.20 0.2
965,167 + 15505 mRNA_7137 0.25 -1.7
965,543 + 15505 mRNA_7137 0.34 -4.2
965,558 - 15505 mRNA_7137 0.34 -3.3
965,660 + 15505 mRNA_7137 0.36 -0.1
965,684 - 15505 mRNA_7137 0.37 -1.6
965,841 + 15505 mRNA_7137 0.41 -4.0
965,901 + 15505 mRNA_7137 0.42 -1.4
966,028 - 15505 mRNA_7137 0.45 -5.0
966,089 - 15505 mRNA_7137 0.46 -2.5
966,108 - 15505 mRNA_7137 0.47 0.4
966,888 + 15505 mRNA_7137 0.64 -1.3
967,011 + 15505 mRNA_7137 0.67 -2.0
967,438 + 15505 mRNA_7137 0.77 -5.5
967,721 + 15505 mRNA_7137 0.83 -1.9
968,030 - 15505 mRNA_7137 0.90 -3.2
968,150 - -1.4
968,182 + -2.1
968,294 - -1.5
968,306 - -3.0
968,359 + -3.8
968,457 + -0.7
968,602 - -0.1
968,623 - -0.4
968,650 + -0.0
968,654 - 0.6
969,353 - -1.3
969,376 - 0.1