Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7108

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7107: 15475 - KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain, at 897416 to 899091 15475 mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899228 to 903559 15476 mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903883 to 906158 15477

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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898,355 - 15475 mRNA_7107 0.56 0.1
898,923 - 15475 mRNA_7107 0.90 -0.1
899,064 - 0.8
899,208 + -0.3
899,315 + 0.1
899,383 - -0.3
899,498 - -0.4
899,551 - -0.5
899,897 + 15476 mRNA_7108 0.15 0.3
899,928 - 15476 mRNA_7108 0.16 -0.1
900,230 + 15476 mRNA_7108 0.23 1.3
900,351 - 15476 mRNA_7108 0.26 0.7
900,396 + 15476 mRNA_7108 0.27 -0.2
900,873 + 15476 mRNA_7108 0.38 -1.8
901,004 + 15476 mRNA_7108 0.41 1.0
901,120 - 15476 mRNA_7108 0.44 0.2
901,375 + 15476 mRNA_7108 0.50 -1.1
901,533 + 15476 mRNA_7108 0.53 0.4
901,718 + 15476 mRNA_7108 0.57 0.6
901,823 + 15476 mRNA_7108 0.60 1.5
901,853 + 15476 mRNA_7108 0.61 0.7
902,585 + 15476 mRNA_7108 0.77 -1.6
902,674 + 15476 mRNA_7108 0.80 0.6
903,092 + 15476 mRNA_7108 0.89 0.1
903,105 + 15476 mRNA_7108 0.89 -1.6
903,248 - 1.3
903,294 + -0.1
903,390 + 0.9
903,408 - 0.0
903,427 + 0.2
903,429 + -0.3
903,690 + 1.1
903,721 - -0.2
903,723 + -0.2
903,745 + 0.2
903,894 - -0.5
903,902 + -0.4
904,066 - 0.4
904,505 - 15477 mRNA_7109 0.27 0.0