Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7004

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7003: 15371 - KOG2394 WD40 protein DMR-N9, at 647498 to 649944 15371 mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650077 to 652863 15372 mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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649,748 - 0.1
649,752 + -0.9
649,865 - -0.1
649,892 + 0.0
649,905 + -1.8
650,016 + -0.1
650,048 + -0.5
650,156 - -0.8
650,173 + 0.4
650,177 + -2.0
650,335 - -1.4
650,348 + -0.4
650,357 - 15372 mRNA_7004 0.10 -0.9
650,365 - 15372 mRNA_7004 0.10 -0.6
650,492 - 15372 mRNA_7004 0.15 -2.8
650,494 + 15372 mRNA_7004 0.15 0.4
650,624 - 15372 mRNA_7004 0.20 1.7
651,017 + 15372 mRNA_7004 0.34 0.5
651,245 + 15372 mRNA_7004 0.42 -0.3
651,668 - 15372 mRNA_7004 0.57 -0.5
651,829 - 15372 mRNA_7004 0.63 -1.4
651,893 + 15372 mRNA_7004 0.65 -0.8
651,933 + 15372 mRNA_7004 0.67 1.2
651,982 - 15372 mRNA_7004 0.68 -0.3
652,395 - 15372 mRNA_7004 0.83 1.3
652,562 + 15372 mRNA_7004 0.89 0.0
652,819 - -0.1
652,835 - -1.4
652,838 - -0.2
652,855 + 1.8
652,992 - -0.1
653,150 + 0.0
653,269 - 15373 mRNA_7005 0.21 0.4
653,270 - 15373 mRNA_7005 0.21 -0.4
653,274 - 15373 mRNA_7005 0.22 2.3
653,278 + 15373 mRNA_7005 0.22 -2.5
653,286 + 15373 mRNA_7005 0.23 0.5
653,288 - 15373 mRNA_7005 0.23 2.4
653,294 + 15373 mRNA_7005 0.24 2.0
653,410 - 15373 mRNA_7005 0.37 1.5