Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6992

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617991 to 620077 15359 mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620430 to 622573 15360 mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622654 to 624401 15361

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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619,575 + 15359 mRNA_6991 0.76 -0.2
619,923 - -0.5
619,928 + 0.2
620,080 - -2.4
620,085 + 1.4
620,106 - -0.2
620,115 + 1.2
620,494 - 1.1
620,513 - 1.0
620,523 - -1.2
620,541 + 0.8
620,633 + 0.7
620,653 - 15360 mRNA_6992 0.10 -0.4
620,664 - 15360 mRNA_6992 0.11 1.2
620,676 + 15360 mRNA_6992 0.11 1.0
621,112 - 15360 mRNA_6992 0.32 -0.3
621,675 - 15360 mRNA_6992 0.58 -0.4
621,701 - 15360 mRNA_6992 0.59 0.6
621,708 - 15360 mRNA_6992 0.60 0.5
621,781 + 15360 mRNA_6992 0.63 0.2
622,145 - 15360 mRNA_6992 0.80 0.5
622,148 - 15360 mRNA_6992 0.80 -1.0
622,267 + 15360 mRNA_6992 0.86 -0.3
622,536 + 0.1
622,558 - 0.2
622,695 - 1.1
622,980 - 15361 mRNA_6993 0.19 0.2