Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6861

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299588 to 301362 15228 mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301646 to 303773 15229 mRNA_6862: 15230 - KOG0754 Mitochondrial oxodicarboxylate carrier protein, at 303833 to 305130 15230

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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300,988 - 15228 mRNA_6860 0.79 -0.7
301,033 - 15228 mRNA_6860 0.81 0.5
301,269 + 1.0
301,297 + 0.9
301,412 + -0.8
301,422 + 0.5
301,428 - 0.7
301,545 - -0.3
301,547 + -0.5
301,556 + -0.6
301,569 - -2.0
301,570 - -0.2
301,571 - 0.4
301,583 - -1.0
301,716 + -0.3
301,719 + -1.1
301,862 + 15229 mRNA_6861 0.10 0.4
302,042 + 15229 mRNA_6861 0.19 0.1
302,157 + 15229 mRNA_6861 0.24 0.0
303,047 + 15229 mRNA_6861 0.66 1.1
303,055 + 15229 mRNA_6861 0.66 0.5
303,140 + 15229 mRNA_6861 0.70 0.8
303,179 - 15229 mRNA_6861 0.72 1.3
303,632 + -0.3
303,758 - -1.8
303,761 - 0.3
303,811 - -0.4
304,083 - 15230 mRNA_6862 0.19 2.5
304,498 + 15230 mRNA_6862 0.51 -0.4
304,611 - 15230 mRNA_6862 0.60 1.7
304,631 - 15230 mRNA_6862 0.61 -4.1
304,633 - 15230 mRNA_6862 0.62 -1.0
304,635 + 15230 mRNA_6862 0.62 0.3