Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6832

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227427 to 228724 15198 mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229033 to 229533 15199 mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229712 to 231545 15200 mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231692 to 232700 15201

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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228,847 + -1.4
228,872 + -1.7
228,894 - 0.0
228,981 + 1.0
229,147 - 15199 mRNA_6831 0.23 -1.3
229,149 + 15199 mRNA_6831 0.23 0.1
229,150 - 15199 mRNA_6831 0.23 1.1
229,457 - 15199 mRNA_6831 0.85 -0.8
229,467 + 15199 mRNA_6831 0.87 -0.1
229,467 + 15199 mRNA_6831 0.87 1.3
229,545 - -2.3
229,568 + 0.3
229,593 - 1.0
230,039 - 15200 mRNA_6832 0.18 -0.2
230,325 + 15200 mRNA_6832 0.33 1.0
230,457 + 15200 mRNA_6832 0.41 -0.6
230,895 - 15200 mRNA_6832 0.65 -0.3
231,024 - 15200 mRNA_6832 0.72 -0.0
231,058 - 15200 mRNA_6832 0.73 0.0
231,192 - 15200 mRNA_6832 0.81 -1.0
231,238 + 15200 mRNA_6832 0.83 -0.6
231,350 + 15200 mRNA_6832 0.89 -0.7
231,471 + 1.9
231,471 - 0.2
231,499 - 1.1
231,515 + 1.0
231,622 - -0.3
231,632 + -1.0
231,659 + -0.8
231,674 + -0.6
231,775 - -1.6
231,783 - -0.5
231,792 + -1.8
231,795 + 15201 mRNA_6833 0.10 -0.2
231,815 - 15201 mRNA_6833 0.12 -1.6
231,815 + 15201 mRNA_6833 0.12 -3.5
231,930 - 15201 mRNA_6833 0.24 -1.4
231,931 - 15201 mRNA_6833 0.24 0.1
231,937 - 15201 mRNA_6833 0.24 -2.1
231,955 + 15201 mRNA_6833 0.26 -0.8
231,962 - 15201 mRNA_6833 0.27 -0.6
232,047 + 15201 mRNA_6833 0.35 -0.6
232,513 + 15201 mRNA_6833 0.81 -1.9