Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6803

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6802: 15170 - Hypothetical Protein, at 170561 to 172312 15170 mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172404 to 173557 15171 mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173731 to 174873 15172

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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171,545 - 15170 mRNA_6802 0.56 1.0
171,576 + 15170 mRNA_6802 0.58 0.8
171,661 - 15170 mRNA_6802 0.63 0.6
171,825 + 15170 mRNA_6802 0.72 -1.4
172,104 + 15170 mRNA_6802 0.88 1.3
172,105 - 15170 mRNA_6802 0.88 0.9
172,311 + 1.2
172,316 - -0.2
172,426 - -1.3
172,450 + -0.7
172,495 - 1.8
172,567 + 15171 mRNA_6803 0.14 0.6
172,859 + 15171 mRNA_6803 0.39 1.5
172,870 - 15171 mRNA_6803 0.40 2.1
173,001 + 15171 mRNA_6803 0.52 1.4
173,129 + 15171 mRNA_6803 0.63 1.8
173,163 + 15171 mRNA_6803 0.66 1.5
173,273 - 15171 mRNA_6803 0.75 1.1
173,436 + 15171 mRNA_6803 0.89 0.2
173,439 - 15171 mRNA_6803 0.90 2.0
173,604 - 1.4
173,712 - 0.1
173,750 + -0.2
173,769 - -0.8
173,769 + -0.8
173,769 - 0.5
173,770 + -3.6
173,770 - 0.1
173,771 - 0.2
173,778 + -0.3
173,784 + 0.6
173,784 - -0.3
173,791 + -1.3
173,793 + -0.0
173,905 - 15172 mRNA_6804 0.15 -0.3
173,915 - 15172 mRNA_6804 0.16 -0.3
173,916 - 15172 mRNA_6804 0.16 0.3
173,928 + 15172 mRNA_6804 0.17 0.5
173,953 + 15172 mRNA_6804 0.19 2.1
173,974 + 15172 mRNA_6804 0.21 0.2
174,101 + 15172 mRNA_6804 0.32 0.8
174,342 - 15172 mRNA_6804 0.53 -0.2