Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6793

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143720 to 144685 15160 mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144793 to 148155 15161 mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148472 to 150085 15162

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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143,850 - 15160 mRNA_6792 0.13 0.9
143,906 + 15160 mRNA_6792 0.19 0.6
144,023 + 15160 mRNA_6792 0.31 0.3
144,186 + 15160 mRNA_6792 0.48 2.5
144,602 - 1.4
144,614 + -2.5
144,638 + 1.3
144,742 + -0.3
144,752 + 1.5
144,755 - 0.3
144,760 + 0.1
144,762 - 0.1
144,765 + 0.9
144,775 - 1.1
144,778 + 1.5
144,783 - 0.4
144,923 + 1.5
144,924 - 3.5
144,937 + 2.3
144,939 - 0.4
145,016 + 0.5
145,190 + 15161 mRNA_6793 0.12 2.0
145,219 + 15161 mRNA_6793 0.13 0.9
145,247 + 15161 mRNA_6793 0.13 3.3
145,282 + 15161 mRNA_6793 0.15 0.4
145,362 - 15161 mRNA_6793 0.17 0.8
145,363 + 15161 mRNA_6793 0.17 -0.7
145,758 + 15161 mRNA_6793 0.29 3.5
145,798 + 15161 mRNA_6793 0.30 1.8
145,800 + 15161 mRNA_6793 0.30 1.5
146,099 + 15161 mRNA_6793 0.39 1.5
146,116 + 15161 mRNA_6793 0.39 1.2
146,264 + 15161 mRNA_6793 0.44 2.0
146,391 - 15161 mRNA_6793 0.48 1.3
146,494 - 15161 mRNA_6793 0.51 2.2
146,514 + 15161 mRNA_6793 0.51 2.0
146,793 - 15161 mRNA_6793 0.59 1.7
146,799 + 15161 mRNA_6793 0.60 1.6
146,927 - 15161 mRNA_6793 0.63 2.1
147,086 - 15161 mRNA_6793 0.68 2.5
147,518 - 15161 mRNA_6793 0.81 3.0
147,817 + 15161 mRNA_6793 0.90 0.7
148,254 - 0.7
148,270 + 1.7
148,370 - 0.9
148,401 - -0.5
148,421 - -0.8
148,545 - -0.4
148,546 + 1.1
148,698 - 15162 mRNA_6794 0.14 2.4
148,700 - 15162 mRNA_6794 0.14 -0.1
149,032 + 15162 mRNA_6794 0.35 -0.8