Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6736

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6735: 15103 - Hypothetical Protein, at 24942 to 26366 15103 mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26533 to 28608 15104 mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29328 to 32887 15105

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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25,636 + 15103 mRNA_6735 0.49 0.9
25,745 - 15103 mRNA_6735 0.56 0.7
25,750 + 15103 mRNA_6735 0.57 -1.3
25,864 + 15103 mRNA_6735 0.65 0.3
25,871 - 15103 mRNA_6735 0.65 0.9
25,912 + 15103 mRNA_6735 0.68 0.0
26,056 + 15103 mRNA_6735 0.78 -0.4
26,301 + 1.0
26,330 + 0.4
26,504 + 2.1
26,531 + 0.7
26,534 - -0.9
26,588 - 0.0
26,629 + -0.3
26,646 + 0.4
26,751 - 15104 mRNA_6736 0.11 -0.7
26,781 - 15104 mRNA_6736 0.12 -1.0
26,927 - 15104 mRNA_6736 0.19 1.5
27,128 + 15104 mRNA_6736 0.29 -0.0
27,389 + 15104 mRNA_6736 0.41 1.4
27,464 - 15104 mRNA_6736 0.45 -0.6
27,485 + 15104 mRNA_6736 0.46 -0.3
27,506 + 15104 mRNA_6736 0.47 0.4
27,607 - 15104 mRNA_6736 0.52 -1.3
27,825 + 15104 mRNA_6736 0.62 0.6
28,048 - 15104 mRNA_6736 0.73 0.3
28,082 - 15104 mRNA_6736 0.75 1.2
28,088 + 15104 mRNA_6736 0.75 1.1
28,088 + 15104 mRNA_6736 0.75 0.1
28,123 - 15104 mRNA_6736 0.77 0.6
28,234 + 15104 mRNA_6736 0.82 -0.3
28,265 + 15104 mRNA_6736 0.83 1.4
28,374 - 15104 mRNA_6736 0.89 0.5
28,500 - -0.1
28,653 - -0.0
28,712 - -0.5
28,946 + 2.0
28,970 + 0.5
28,990 + 0.9
29,115 - -0.9
29,121 - 0.7
29,124 + 0.6
29,269 + 0.7
29,399 - 0.0
29,449 + 0.5
29,540 - 0.0
29,550 - -0.3
29,585 - 0.1
29,606 + -1.5