Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6658

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1363504 to 1366738 15025 mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1366899 to 1370407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1370693 to 1373174 15027

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,365,906 - 15025 mRNA_6657 0.74 0.4
1,366,210 + 15025 mRNA_6657 0.84 1.0
1,366,353 + 15025 mRNA_6657 0.88 0.4
1,366,361 - 15025 mRNA_6657 0.88 -0.6
1,366,385 + 15025 mRNA_6657 0.89 -0.1
1,366,387 - 15025 mRNA_6657 0.89 -0.6
1,366,493 - -0.4
1,366,518 + -0.2
1,366,657 - -0.4
1,366,659 + 0.1
1,366,665 - -0.5
1,366,671 + 1.1
1,366,676 + 0.1
1,366,791 - -0.7
1,366,791 - 0.7
1,366,791 - 0.7
1,366,791 - -0.4
1,366,793 - 0.0
1,366,809 + 0.2
1,366,819 + 0.1
1,366,821 - 0.2
1,366,822 + 1.1
1,366,826 + -0.5
1,366,835 + 0.1
1,366,836 - -1.8
1,366,838 + 0.2
1,366,841 + -2.1
1,366,849 + -0.1
1,366,861 + -0.3
1,366,871 - -1.1
1,366,874 + 0.1
1,366,933 - -1.0
1,366,935 + -0.1
1,367,107 - -0.3
1,367,108 + 0.4
1,367,121 - -0.3
1,367,146 + 1.5
1,367,213 - 1.0
1,367,263 + 15026 mRNA_6658 0.10 0.2
1,367,269 - 15026 mRNA_6658 0.11 0.7
1,367,409 - 15026 mRNA_6658 0.15 -0.2
1,367,977 - 15026 mRNA_6658 0.31 -2.4
1,368,007 - 15026 mRNA_6658 0.32 0.5
1,368,055 + 15026 mRNA_6658 0.33 -0.4
1,368,573 - 15026 mRNA_6658 0.48 1.3
1,368,894 + 15026 mRNA_6658 0.57 -0.2
1,369,780 - 15026 mRNA_6658 0.82 -0.5
1,369,796 + 15026 mRNA_6658 0.83 -1.7
1,370,018 - 15026 mRNA_6658 0.89 0.1
1,370,202 - 0.6
1,370,209 + 0.1
1,370,234 - 1.4
1,370,364 - -0.3
1,370,406 + -0.7
1,370,512 - 0.3
1,370,514 + 0.9
1,370,530 + 1.0
1,370,558 + 0.2
1,370,563 - -2.8
1,370,676 - -0.2
1,370,691 - 1.7
1,370,815 + -2.7
1,371,090 + 15027 mRNA_6659 0.16 -2.7