Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6581

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6580: 14948 - K11098 SNRPF, SMF small nuclear ribonucleoprotein F, at 1150029 to 1150564 14948 mRNA_6581: 14949 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 1150957 to 1153150 14949 mRNA_6582: 14950 - K11517 HAO (S)-2-hydroxy-acid oxidase, at 1153547 to 1155730 14950

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,150,712 - 0.1
1,150,737 + 2.2
1,150,842 - 1.4
1,150,845 + -0.6
1,150,849 + 1.5
1,150,850 + -1.1
1,150,864 - 0.6
1,150,873 - -0.7
1,150,993 - -0.9
1,151,005 + -0.2
1,151,026 - -0.4
1,151,342 + 14949 mRNA_6581 0.18 -2.1
1,152,044 - 14949 mRNA_6581 0.50 1.6
1,152,195 - 14949 mRNA_6581 0.56 1.4
1,152,629 + 14949 mRNA_6581 0.76 -0.6
1,153,181 + 1.3
1,153,222 + -0.9
1,153,238 - -0.2
1,153,346 - 0.6
1,153,346 + -0.4
1,153,349 - 0.1
1,153,366 + 2.0
1,153,379 + 1.1
1,153,388 - 0.1
1,153,519 + 1.1
1,153,537 - -0.1
1,153,676 + 1.1
1,154,122 + 14950 mRNA_6582 0.26 -0.3