Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6469

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836 mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858043 to 864348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864745 to 865870 14838

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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857,804 + 1.1
857,872 + -0.2
857,900 + -0.7
858,041 + 0.1
858,150 - 0.1
860,303 - 14837 mRNA_6469 0.36 1.5
861,323 - 14837 mRNA_6469 0.52 -1.3
861,728 + 14837 mRNA_6469 0.58 -3.5
862,446 + 14837 mRNA_6469 0.70 -2.9
862,563 - 14837 mRNA_6469 0.72 -0.5
863,932 - -2.1
863,938 - -2.0
864,093 - -2.6
864,093 - -0.8
864,182 + -2.1
864,385 - 1.6
864,401 + -0.9
864,685 + -1.0
864,793 + 0.6
864,842 + -0.5
864,869 - 14838 mRNA_6470 0.11 0.2
864,977 + 14838 mRNA_6470 0.21 -0.4
864,979 + 14838 mRNA_6470 0.21 1.8
864,986 - 14838 mRNA_6470 0.21 0.4
865,031 + 14838 mRNA_6470 0.25 -1.9
865,139 + 14838 mRNA_6470 0.35 -0.3
865,170 + 14838 mRNA_6470 0.38 -1.2
865,302 - 14838 mRNA_6470 0.49 -0.2