Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6394

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6393: 14761 - KOG3823 Uncharacterized conserved protein, at 706440 to 709966 14761 mRNA_6394: 14762 - HMMPfam-Asparagine synthase-PF00733,SUPERFAMILY--SSF52402,SUPERFAMILY--SSF56235, at 710467 to 712891 14762 mRNA_6395: 14763 - K19403 MCPH1 microcephalin, at 713200 to 716170 14763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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709,491 - 14761 mRNA_6393 0.87 1.2
709,496 + 14761 mRNA_6393 0.87 -1.2
709,776 + -1.1
709,800 - 0.3
710,025 - -0.1
710,148 - -0.1
710,178 - -0.5
710,178 + 1.5
710,189 - -0.3
710,201 + -0.0
710,231 - 1.1
710,373 + -0.4
710,504 - 1.7
710,608 - -0.1
710,633 + -0.6
710,635 + 0.2
710,640 - -1.3
710,738 + 14762 mRNA_6394 0.11 -1.4
710,800 - 14762 mRNA_6394 0.14 1.3
710,854 + 14762 mRNA_6394 0.16 -0.9
710,921 - 14762 mRNA_6394 0.19 -1.4
710,922 + 14762 mRNA_6394 0.19 -2.2
710,933 + 14762 mRNA_6394 0.19 -0.8
710,934 - 14762 mRNA_6394 0.19 1.1
710,971 - 14762 mRNA_6394 0.21 1.3
711,165 + 14762 mRNA_6394 0.29 -1.4
711,347 - 14762 mRNA_6394 0.36 0.1
711,363 - 14762 mRNA_6394 0.37 0.4
711,980 + 14762 mRNA_6394 0.62 -0.8
712,066 - 14762 mRNA_6394 0.66 -0.4
712,256 + 14762 mRNA_6394 0.74 0.4
712,460 - 14762 mRNA_6394 0.82 1.0
712,541 - 14762 mRNA_6394 0.86 1.4
712,636 - 14762 mRNA_6394 0.89 0.2
712,637 + 14762 mRNA_6394 0.89 0.6
713,267 + -0.1
713,285 - -1.2
713,286 + -0.2
713,428 - 0.5
713,502 + 14763 mRNA_6395 0.10 0.3
713,704 - 14763 mRNA_6395 0.17 -0.4
713,704 - 14763 mRNA_6395 0.17 -0.2
713,710 + 14763 mRNA_6395 0.17 0.1
713,800 - 14763 mRNA_6395 0.20 0.5