Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6371

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6370: 14738 - K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13, at 655960 to 658637 14738 mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659092 to 660021 14739 mRNA_6372: 14740 - BLAST similar to DNA repair protein Dds20/Mei5 [Botrytis ci..., at 660336 to 661808 14740

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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658,575 - 1.7
658,598 + 0.0
658,603 + 0.3
658,723 - 0.6
658,728 + -0.3
658,872 - -0.0
658,888 + -0.2
658,889 + 2.2
658,897 - -0.3
658,898 - -0.8
658,900 + -2.9
658,907 - -0.5
658,914 + -1.1
658,915 - 0.7
658,916 + 0.5
658,921 + 0.7
658,930 + 1.4
658,950 - -0.3
659,031 - -3.3
659,044 - -3.1
659,187 + 14739 mRNA_6371 0.10 0.8
659,346 - 14739 mRNA_6371 0.27 0.9
659,769 + 14739 mRNA_6371 0.73 0.1
659,797 + 14739 mRNA_6371 0.76 -3.0
659,951 - 0.2
659,952 + -0.4
660,222 - 0.8
660,227 + 0.3
660,227 + -3.4