Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6291

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6290: 14658 - KOG0394 Ras-related GTPase, at 451269 to 452760 14658 mRNA_6291: 14659 - K12182 HGS, HRS, VPS27 hepatocyte growth factor-regulated tyrosine kinase substrate, at 453109 to 455308 14659 mRNA_6292: 14660 - K15082 RAD7 DNA repair protein RAD7, at 455485 to 457859 14660

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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452,250 - 14658 mRNA_6290 0.66 0.2
452,523 + 14658 mRNA_6290 0.84 1.1
452,578 - 14658 mRNA_6290 0.88 0.0
452,690 - 0.5
452,716 + -0.2
452,841 - -0.4
452,842 - 0.5
452,861 + 1.1
453,036 + -0.4
453,178 - 1.0
453,191 - 0.5
453,217 + 1.7
453,466 + 14659 mRNA_6291 0.16 1.8
453,608 + 14659 mRNA_6291 0.23 -0.6
454,334 + 14659 mRNA_6291 0.56 0.7
454,784 + 14659 mRNA_6291 0.76 2.5
455,067 + 14659 mRNA_6291 0.89 0.3
455,096 + 0.3
455,184 - -0.3
455,207 - -0.2
455,210 + 1.3
455,213 + -2.1
455,227 + -0.1
455,337 - 1.8
455,400 - 0.8
455,453 + -0.1
455,457 - -0.8
455,459 - 0.2
455,466 + -0.2
455,473 - 1.0
455,571 + 0.4
455,582 - 0.7
455,591 + -0.3
455,591 - 0.2
455,608 - 0.2
455,743 + 14660 mRNA_6292 0.11 -0.5
455,769 - 14660 mRNA_6292 0.12 2.0
455,895 - 14660 mRNA_6292 0.17 0.7
456,063 - 14660 mRNA_6292 0.24 0.5