Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6267

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6266: 14634 - Hypothetical Protein, at 396556 to 399256 14634 mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399476 to 403885 14635 mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404053 to 405342 14636

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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398,544 + 14634 mRNA_6266 0.74 -1.1
399,156 - 0.3
399,162 - -1.3
399,165 - -0.1
399,179 - -0.1
399,185 + 0.7
399,188 - -0.3
399,300 - 2.2
399,305 - 1.2
399,305 - -1.2
399,306 - 1.6
399,315 + -1.1
399,316 - -1.2
399,316 - -1.1
399,318 - -0.6
399,324 - 1.1
399,325 + 0.9
399,338 + -0.1
399,344 - 0.0
399,349 - -0.1
399,489 + 1.6
399,523 + -0.8
399,654 + -1.4
399,796 - 3.6
399,915 - 2.9
400,496 - 14635 mRNA_6267 0.23 2.6
401,055 + 14635 mRNA_6267 0.36 2.9
401,263 - 14635 mRNA_6267 0.41 3.8
401,636 - 14635 mRNA_6267 0.49 0.9
402,015 + 14635 mRNA_6267 0.58 1.0
402,045 + 14635 mRNA_6267 0.58 2.4
402,328 + 14635 mRNA_6267 0.65 1.8
402,496 - 14635 mRNA_6267 0.68 1.5
402,816 + 14635 mRNA_6267 0.76 1.0
402,901 - 14635 mRNA_6267 0.78 1.3
403,180 - 14635 mRNA_6267 0.84 1.9
403,184 + 14635 mRNA_6267 0.84 2.6
403,341 + 14635 mRNA_6267 0.88 0.6
403,477 + 1.9
403,491 + 2.4
403,496 - 3.7
403,517 - 1.7
403,521 - 2.2
403,641 - 2.6
403,663 + 3.2
403,667 - 1.6
403,667 - 0.5
403,673 + 2.5
403,683 + 1.0
403,684 + 1.7
403,699 + 2.7
403,945 - 0.5
403,952 - 1.7
403,967 + 0.9
403,973 + -0.4
403,973 + 1.4
403,982 - 0.7
403,985 - 1.2
403,986 + 1.1
403,986 + -0.3
403,989 + 1.3
403,994 - 1.5
403,995 + 1.0
403,998 + 2.9
403,999 - 1.5
404,000 + 0.5
404,005 + 0.2
404,007 + 2.6
404,013 + 0.4
404,021 + 1.0
404,126 - 0.4
404,133 - 1.1
404,139 - 0.7
404,143 + -1.9
404,159 + 2.2
404,164 - 0.5
404,164 - 0.9
404,288 - 14636 mRNA_6268 0.18 0.8
404,299 - 14636 mRNA_6268 0.19 1.0